Hemitrygon akajei (red stingray): 140731012
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Entry
140731012 CDS
T11019
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140731012 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
haka03041
]
140731012 (prpf4)
Spliceosome [BR:
haka03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
140731012 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
PRP4
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_EML
Beta-prop_DCAF4
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_Vps41
WD_LRWD1
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
Beta-prop_WDR11_1st
WD40_like
Motif
Other DBs
NCBI-GeneID:
140731012
NCBI-ProteinID:
XP_072908280
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Position
7:complement(144151540..144200978)
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AA seq
506 aa
AA seq
DB search
MSDDDDVPLPKKSRIYYGSLEEKERERIIKGEGGYLGKEAVKVGVEAGHINISGGEFYDV
EDHISERQAEVLAEFERRKRARQINVSTDDAEVKACLRALGEPITLFGEGPAERRERLRN
ILSVVGADALKKTEKIEDAKKSRQEHQQTWYHEGPSSLKTARLYIARFSLPRALKRLEEA
RANKEVPEASRTARQQELHKSLRALNNFCSQIGDDRPISYCQFSPNSKLLVTASWSGLCK
LWDVPDCNLIRTLRGHCTNVGAIVFHPQATISLDEKDCNMASCAADGSVKLWNLESDEPV
ANIEGHTMRVARVAWHPSGRFLGTTCYDHSWRLWDLEAQEEILHQEGHSKGVYDIAFHRD
GSLVGTGGLDAFGRLWDLRTGRCIMFLEGHLKEIYGISFSPNGYHAATGSGDNSCKVWDL
RQRKCIYTIPAHHNLLSAVRFQPTDGHYLLTGAYDNTAKIWSHPGWSPLKTMAGHEGKVM
GLDISPNGQLIATCSYDRTFKLWTSE
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgatgacgatgttccactgccgaagaagtcccggatttactatggaagcctt
gaagagaaggagagagaaaggattatcaaaggagaaggaggatatctggggaaagaggct
gtgaaagttggtgtagaagccgggcacattaacatatctggtggtgaattctacgatgtt
gaagatcacatcagcgagaggcaggccgaagtgctggcagagtttgagcgcagaaaacga
gcccggcagattaatgtttccacagatgatgcagaagtgaaggcctgtctgcgagcgctt
ggggaaccaatcaccctttttggtgaagggccagccgaacgacgagaaaggttgaggaat
atcttatctgtggtgggagctgatgccttaaagaaaacagagaagatagaagatgcaaag
aaaagccgacaggagcaccagcagacctggtatcacgagggtcccagttccctgaagact
gctcgtctctacattgcacgattttccctgccaagggctttgaagcgattggaagaggca
agagccaacaaagaggttccagaagcttcccgcactgctcgacaacaagaacttcacaag
agtctaagggccctgaataacttctgtagtcagattggtgatgaccgtcccatttcctac
tgtcagttcagccccaactccaaactcctagttacagcttcctggagcggattatgtaag
ctgtgggatgttcctgactgtaaccttattcgtacactgagaggtcactgcacgaacgtg
ggcgccattgtatttcatccgcaagccaccatttcacttgatgaaaaggactgtaatatg
gcatcgtgtgcggccgacggctcagtgaagctctggaatttggaaagtgatgagccagta
gccaacattgaagggcacacaatgagagtcgctcgagtggcgtggcatccatcaggcagg
tttctcgggaccacatgttatgaccactcctggagactctgggacctggaagctcaggag
gaaatcctgcaccaggaaggccatagcaagggtgtctatgacattgccttccaccgtgat
ggctctttggtgggaactggtggccttgatgcctttggacgtctgtgggacctgcggact
ggtcgatgcatcatgttcctagaaggacatttgaaggagatctacggaatcagcttctct
cccaatggatatcacgcagcaaccggaagtggcgacaacagttgcaaagtttgggacctg
cgacagcggaaatgtatctacaccatcccagcacatcataacctcctgtcagcagtcagg
tttcagcccacagatggacactatctcctcaccggtgcctatgacaacacagcaaagata
tggagccaccctgggtggtcaccgctcaaaacaatggctggccatgagggcaaagtgatg
ggactggacatttctccaaatgggcagctgattgctacgtgttcttatgacaggaccttt
aaactctggacatctgagtag
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