Hemitrygon akajei (red stingray): 140731226
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Entry
140731226 CDS
T11019
Symbol
nup188
Name
(RefSeq) nucleoporin NUP188
KO
K14311
nuclear pore complex protein Nup188
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140731226 (nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haka03019
]
140731226 (nup188)
Messenger RNA biogenesis [BR:
haka03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
140731226 (nup188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
ThiN
Motif
Other DBs
NCBI-GeneID:
140731226
NCBI-ProteinID:
XP_072908819
LinkDB
All DBs
Position
7:complement(179082025..179199353)
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AA seq
1742 aa
AA seq
DB search
MAAAAGLCVRSSRELWTILVGRSALRDTAQIEAELDQHCDRLLAGLSFYKPPSVSSADKL
KADKEVVASLKELGLRISKFLSLDEQQSVQILQSYLQEDYRGTKDSIKVVLQDERQSQTL
QLKIAEYYYEERLYTLRCVLYLLTYFQDERHPYRAEYSKCVDKLEKELVTNYRKQFEELF
RTEAPTWESHGNLMTEHQVSRWFLQCLREQALILEIIFLYYAYFEMGPEDLLAFARIFKE
QGFGARQTNRHLVDESMDGLVDRIGYFSALILVEAMDIDFLHKCALEDSVDRHQFANARE
VCQEMDKLLLTLGDIPHHAPVLLSWALLRHSLCLDESSHVIRRLGSIAIQQNAFQYMTQM
LKALGSGGNNCTASTARMCIYGLLSFVLTSFEEETLGDQQHLINLACEVFAAPSLAELFW
DTEPTTGLAVLLDNNCGMFPQSMAPLLQLLSALISDKSTAKKVYSFLDKMSCYTELYKLK
PNDILSHEDETQWRRQTPKLLYPLGSGKANIRMPQGTYGTVMPTAQGYLVRWHYSYSAWT
IFTCEIEMLLHVVSTADVLLHCQKVKPIIDVVHKIVSTDWSITDCLLPITSRLYMLIQRL
SSVMNPPMEVIASCVNTLTVLATRMPAKVWSDLQHTGFLPYSVTQITGIVQSIRAEGMQA
GSYGNLLLSIERPQGEYSVTRAFLQLVITLVKGQLGSTQSLGLMPCVVFVLKELLPTYHK
WRYNVYGMREEIGCLILELIYTILNLNPEEASQGSPLSLQTMCIHCLANTEAGQAIVNIM
AIGVDTIDTVMAAQPNSSGSEGSGQTLTQTMKLAFSITNNVIKLKPSSEVISPLEQALTQ
HGTHGNNLIAVLAKYIYHRHDPALPRLAIQLLKRLAMVAPMSVYACLGSDAAAIRDAFLN
RLQSKTEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGAVGSKEFILGEWSCLQVVL
EFIDSKQHGKYWCPPLIHRAAIAFLHALWQDRRDSAMTVLRTKDRFWENLTSVLFGELPA
PSDITEKSVLETCAFTLKIICLEIYYVVRGSLDQTLKNTLKMFFDKKRYEYWSEYIKSLV
IYMTEADTDGASTFLEFHKLISAWRMFLVLATSYEEVMHLCDCSLRLQLLHDVLETTKVL
LTVTSSAPCLRMGSMLATLLLILLKQWKSTIVNVSKILDPLDQILESLSQSNQYFMEKTK
AKIYSAIIIALQIKQLRVSDFPQYSQMLLTVCETIHNEAIVLLDQTHHALTTDAGLFDDK
DSMETDCAPRLQHKDQKDGVCVLALYLAKELCEMDESGDHLISIIRKVPFLPAMLSTLEL
SLRVKQNLHFAEASLHLLLGLAKTQQGAAAVGGAGVLQSICLPLLSVYQLSANGTTQTLG
SSRKSLDAPSWPGVYRLTMSLMERLLKSLRYNFLTESLDFVGVHQERILQCLDAVRKVQS
LACLDEVDHTVGFLLQLSNFIKEWRFHLPQLLRDVQVNLCYLCQTCTFLLHSPKVLQHYL
QVKNGDALPPAILPRQPKPAQTPTKQQNTERDEVEQRAMLKVQSSLLRILSKTLAAIRHF
TPDLCQILLDQSLDLAEYDMLFVLNFTTPAFDSDVAPSFGTLLATVNVVLNMQGEIDKKK
EPMSLNMIPLASSEETKSLKALLRFTMENCFYALISQAVRYLKDPSVHARDKQRMKQELS
SELSTVLSSISRYSRRGAPSSPAAALLLTPPNKSTCSMSKLCPESQEPLIQLVQAFVRQI
QR
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagcggcgggactgtgtgtgaggagcagtcgtgagctatggacgatattagtg
ggaaggtcagcactaagagatactgctcagattgaagcggaattggatcagcattgtgac
cgattactggctggactttctttctacaagcctcccagtgtatcttctgctgataaacta
aaggctgataaggaagtggtggcttcattgaaggaacttggattacggatcagcaagttc
ttgagtttggatgagcagcagagcgttcaaatattacagtcatatcttcaagaggattac
aggggcacaaaggattcaataaaggtagttttgcaggatgagcgacaaagccaaacactg
cagctcaagattgcggaatactattatgaagaacgactttatacattacgttgtgttctc
taccttctcacatattttcaagatgaacgacatccttatagggctgaatactcaaaatgt
gtggacaagctggagaaggaactggttacgaattatcggaagcagtttgaggaattgttc
agaactgaagctccaacttgggaatctcatgggaatctaatgacagaacatcaggtgtct
cgttggttcctgcaatgcctgagggagcaagctcttattttagagattatcttcctatat
tacgcctattttgaaatgggaccagaagatctcttggcttttgcaagaatattcaaagag
caaggatttggagcacggcaaacaaaccgacaccttgtagatgaaagcatggatggactg
gttgatcgcattgggtatttcagtgcattgatcctagtcgaggcaatggacattgatttt
ctacataaatgtgctcttgaggatagtgtagaccgacatcagtttgctaatgctcgagag
gtttgccaggagatggataagctgctgttgacgttgggggacattccacaccatgctcca
gtgctgctgtcctgggctcttctgcgtcattctttgtgcctggatgaatcaagtcatgta
atcaggcgcttagggagtatcgctattcaacagaatgcctttcagtacatgacacagatg
cttaaggcacttggcagtggaggaaacaattgtacagcaagtactgcacgaatgtgcatc
tatggacttctctcatttgtcttaacatcttttgaggaagaaactttgggagatcaacag
cacttgattaacctggcctgtgaggtgtttgcagccccaagtctggcagaacttttttgg
gatacagaacccacaacaggtcttgctgtgttgttggacaacaattgtggaatgttccca
cagtctatggcaccactgctgcagctgctgtcggcacttatatcggacaaaagcacagct
aaaaaggtttacagctttttggacaaaatgtcttgttatacggaattatacaagctcaaa
ccaaatgatatactttcacatgaggatgaaacccagtggagaaggcaaacaccaaaacta
ctttatcctcttggatctggaaaggccaatatacgtatgccacagggtacgtatggaact
gtgatgcctacagcgcagggttaccttgtgcgttggcattactcgtacagtgcctggaca
attttcacttgtgagattgaaatgctgctccatgtggtttcaacagcagatgttctcctt
cattgccaaaaggtcaaacctatcattgatgtggtgcataaaatcgtcagcacagattgg
tccattacagattgtctgctgccaattacttcacgcttatacatgttaattcagaggctt
agttccgttatgaaccctccaatggaagtgattgcttcttgcgtaaataccttaactgtt
ctggccacacggatgccagccaaggtatggtcagatctacagcacacaggcttcttacca
tactctgtgacacaaatcaccggaattgtgcagtctatcagggctgaagggatgcaagct
ggtagctatggtaatcttctgctgagtattgagagaccacagggtgaatatagtgtcaca
agagcatttctgcagctggttataacactggtcaagggacaactgggaagcacacagagt
ctaggtcttatgccttgtgtggtcttcgtcttgaaagagttgctgccgacctaccataaa
tggcgttataatgtttatggcatgcgagaagaaattggttgcctgattcttgagcttatt
tataccatcttgaatctgaaccccgaagaggcatcgcaaggcagtcctctcagtcttcag
actatgtgcatccattgtttggcaaacacagaagcaggacaagccatcgtaaatattatg
gctattggggtggacacaattgatacagtaatggcagcacaacccaacagcagcggatct
gaaggatcaggtcagactctcactcagaccatgaaactggcattttctataacgaacaat
gttatcaaactgaagccatcatcagaagtgatctcgccattggagcaggctctgactcaa
catggtacccatggtaataacttaatagcagttttggcaaagtatatttaccataggcat
gatcctgcgttgccacgtcttgccattcagcttctgaagagacttgcaatggtggctcca
atgtcagtttatgcctgtcttggaagtgatgctgcggcaatacgtgatgcatttcttaat
agactgcaaagcaagacagaggacatgcgtattaaggtgatgatcctggagtttttgact
gttgcggtggaaacccagccaggtttgattgaactctttctcaatctggaagtgaaagat
ggtgcagttggatcaaaggagtttatcttgggagaatggagctgtctgcaggtagtactg
gaatttattgactccaagcaacatggaaagtactggtgtcctcctcttattcatcgtgca
gccattgcttttctgcatgccttgtggcaggaccgcagggacagtgccatgactgtttta
cgaaccaaggatcgattttgggagaatttgacatctgtgctttttggagagttgccagcc
ccctctgacattacagagaagagtgtcctcgaaacctgtgccttcactctgaaaattatc
tgcctggaaatatactatgttgtcagaggttctctggaccagactctaaagaacacattg
aaaatgttctttgataagaaacgatatgaatattggtctgaatatatcaaatcccttgtc
atctatatgacggaagcagatactgatggagcctcaacatttctcgaattccataagttg
atatcagcgtggagaatgtttcttgttctggctactagctatgaggaggtgatgcatctt
tgtgattgttcactccggctgcaattactacatgatgttcttgaaacaaccaaagttttg
ctaacagttacctcatctgctccatgcctgcgaatgggatcaatgctagcaacactgctt
ttaatcctactgaaacagtggaaaagcacaattgttaatgtatctaaaatcctggaccct
ttggatcaaattctagagagcctttcacagagcaaccagtacttcatggagaagacaaaa
gcaaaaatatattctgctatcataattgcacttcagatcaagcaactacgagttagtgac
tttcctcagtattctcaaatgctgctaactgtgtgtgagaccatacataacgaagcgatt
gttctactggaccaaacacatcatgcactgacaactgatgctggcttatttgatgacaaa
gatagtatggaaacagattgtgccccacgattacaacacaaggaccagaaggatggagta
tgtgtgctagctctctatcttgcaaaggaactctgtgaaatggatgagagtggtgatcat
ttaatttccatcattcggaaggttccatttcttcctgcaatgcttagcaccttggagctc
agtcttcgagtcaaacagaatttacattttgcagaggcgtcactgcacttgcttttaggt
ctggccaaaacacaacaaggagctgctgcagtgggaggagccggtgttctacaaagcatc
tgtctgccacttctaagtgtttatcagctcagtgccaatggcaccactcagactttggga
tcttcccgaaaatctttggatgctccctcatggccaggtgtgtatcgactcactatgtca
ctgatggaaagacttttaaaatcactacgctataacttccttacggaatcgttagacttt
gttggagtccatcaggagcggatacttcagtgtttggatgcagttcgaaaggtgcagagc
ttggcttgccttgatgaagttgatcacactgttgggtttcttcttcaactttccaacttc
atcaaagagtggcggtttcatctgccacaactgcttagggatgtgcaggtaaatctgtgt
tacctgtgccagacatgtacctttctgcttcatagtccgaaagtgcttcagcactatcta
caggtgaagaatggagatgctcttccgcctgcaattcttcctcggcagcccaaaccagct
caaacgccaacaaagcagcaaaacacagaacgagatgaagtggaacagcgtgcaatgctg
aaagtccaatccagtttgctcaggattctgagtaaaacattagcagctattcgacacttt
actcctgatctatgccagatactgctagaccagtccttagatctggctgaatatgacatg
ctcttcgtcctgaacttcactactccagcatttgattctgatgttgctccatcatttgga
actctgcttgcaactgtgaatgtggttctgaacatgcagggcgagattgataagaagaag
gaacccatgtcactaaatatgataccactagcttcatctgaagagacaaagtctttaaag
gcgcttttgaggttcacaatggaaaactgtttctatgcattgatttcacaagcggtgaga
tatctgaaggacccatctgttcatgcacgggacaagcagagaatgaagcaggagctgagc
tcagagctgagtacagttctgtctagtatttctcgatattctcggcgtggagcaccttca
tcccctgctgcagccttactgctgactcctccaaacaaatcaacctgctccatgtccaag
ttgtgtcctgaaagtcaggaacccttaatacagctggtccaggcctttgttcgacagatt
cagagataa
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integrated database retrieval system
