Hemitrygon akajei (red stingray): 140731618
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Entry
140731618 CDS
T11019
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03030
DNA replication
haka03420
Nucleotide excision repair
haka03430
Mismatch repair
haka03440
Homologous recombination
haka03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
140731618 (rpa1)
03420 Nucleotide excision repair
140731618 (rpa1)
03430 Mismatch repair
140731618 (rpa1)
03440 Homologous recombination
140731618 (rpa1)
03460 Fanconi anemia pathway
140731618 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
haka03000
]
140731618 (rpa1)
03032 DNA replication proteins [BR:
haka03032
]
140731618 (rpa1)
03400 DNA repair and recombination proteins [BR:
haka03400
]
140731618 (rpa1)
Transcription factors [BR:
haka03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
140731618 (rpa1)
DNA replication proteins [BR:
haka03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
140731618 (rpa1)
DNA repair and recombination proteins [BR:
haka03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
140731618 (rpa1)
MMR (mismatch excision repair)
140731618 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
140731618 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
140731618
NCBI-ProteinID:
XP_072909285
LinkDB
All DBs
Position
8:complement(9856811..9948259)
Genome browser
AA seq
613 aa
AA seq
DB search
MAIRLSEGAISSIVQGGTPSQPLLQVISIRKITNGPPRYRVLMSDGIHTLSSFLLATQLN
YMGDDGLIAVNCVCQINRFICNTMKDGRRAVVIVDLKVVRTADQVNGKIGNPVPINEGQT
QQSAAVANLTTIKQPVQNDTPSDAASVHSIPAKIENKLPSKSGGMRGPPNSIGASQTKVV
PIACLNPYQSKWTIRARVTNKSQIRTWSNSRGEGKLFSIELLDESGEIRATVFTDQVDKF
FPLIEVNKVYFVSKATLKTANKQYTSVKNDYEMTFNNETSVIPCSDGDDLPTVQFEFVPI
NQLESKDKDTMLDIIGICKSFEDVTKITVRSNNREVSKRNIFLMDTSGKVVSTTLWGEDA
EKFDGSGQPVVAIKGARLSDFGGRSLSVLSSSTVLINPDIPEAFKLRAWFDTEGQVMEGT
SISDMKGGSTGGNTNWKVLLEVKNENLGHGDKPDYYTTVGTIVYLRKENCMYQACPTADC
NKKVVDQQNGLYRCEKCDREFPNFKYRMILSVNLADFGENQWVTCFQETSEAILGQNANY
LGELKDSNEQAFEEVFQNANFRSFTCRIRVKLETYNDESRIKATMMDVKPVDHKEYSKRL
IMNIRKHAATQAF
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcagattgtccgagggggccatttcgtcaatagttcaagggggaactccttca
cagccacttttacaagtaattagtattcgaaaaattacaaatgggcccccaaggtaccgc
gtgctaatgagtgatggaatccatacactgtcatctttcctccttgcaactcagctgaac
tacatgggagatgacggccttattgcagtaaactgcgtctgccaaatcaacaggttcatc
tgtaacacaatgaaggatggaagacgtgcagtggtgattgtcgacttaaaagttgttaga
acggctgatcaagtgaatggaaagattggtaatccagtgccaatcaatgaaggtcagaca
cagcagtcagctgctgttgccaacttaacgacaatcaaacaacctgtgcaaaatgacact
ccatccgatgctgcttcagttcacagtattccagcaaaaattgagaacaagctgccaagt
aaatctggtggcatgcgaggaccaccaaacagcattggagcatcacagacaaaagtagtg
cccatcgcctgcctgaacccctaccagtctaaatggacaatccgggctcgcgttaccaat
aaaagccagattagaacgtggagcaactcccgtggagaaggaaagctattttctatcgag
ttactggatgagagtggtgaaattagagccacagttttcactgaccaggtggataagttt
ttcccactcattgaagtgaataaggtatattttgtgtcaaaagcaactctgaagactgcc
aacaagcagtacacatctgtgaagaatgattatgagatgacatttaacaatgaaacctct
gtgatcccttgtagtgatggagatgacttgcccacagtacaatttgagtttgtaccgatt
aatcagcttgaaagcaaggacaaggatactatgctcgatataattggaatctgcaagtcg
tttgaagatgtcactaagataacagtgaggtcaaataatcgtgaagtatccaagagaaat
atttttctgatggacacgtctgggaaagttgtcagtactacgctgtggggtgaagatgct
gaaaagtttgacggatcaggacagccagtggtggccattaaaggagccagactttcagat
tttggtggcagatctctatctgttttgtcgtccagcaccgtcttgattaaccctgacatt
ccagaggctttcaaactaagagcatggtttgatactgaaggccaggtgatggaaggaaca
tctatttctgatatgaagggtggttccacaggggggaacacgaactggaaagtactactt
gaagttaaaaatgaaaatttgggtcacggagataagcctgattattacacgactgtcggt
accattgtgtacctaaggaaggaaaactgcatgtaccaggcgtgtcccactgcagactgc
aataagaaggttgtggatcaacagaatggcctttatagatgtgagaaatgtgatcgcgag
ttccccaacttcaaatatcgaatgatcttgtcagtaaatctggcagacttcggagaaaat
cagtgggtaacgtgtttccaagagacaagtgaggcaatccttgggcagaatgccaattat
cttggagagctgaaggactcgaatgaacaagcctttgaagaagttttccagaatgcaaac
ttccggtctttcacctgcagaatccgtgtcaaacttgaaacatacaatgatgaatctcgc
atcaaagcgacaatgatggatgtgaaaccagtggaccataaggagtacagcaagaggctg
ataatgaatattaggaaacatgcagctacacaagctttctga
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