Hemitrygon akajei (red stingray): 140731740
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Entry
140731740 CDS
T11019
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140731740 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
haka03041
]
140731740 (prpf8)
Spliceosome [BR:
haka03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
140731740 (prpf8)
Complex C
U5 SnRNP specific factors
140731740 (prpf8)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
140731740
NCBI-ProteinID:
XP_072909589
LinkDB
All DBs
Position
8:complement(27054470..27095384)
Genome browser
AA seq
2339 aa
AA seq
DB search
MAAFPYRGAPGPNPVPVAVPVPVPVPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDA
QKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDV
SVLYHITGAISFVNEIPWVIEPVYISQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPL
DYADNILDVEPLEAIQMELDSEEDGPVAEWLYDHQPLKDNPKFVNGSTYRRWQFTLPMMS
TLYRLANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDVNLQDEDWNEF
NDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLI
NPISHRHSVKSQEPLPDDDEEFELPDSVEPFLKETPLYSDNTANGIALLWAPRPFNLRSG
KTRRALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSF
KSTKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERK
KSRFGNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKY
KLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLL
ARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEA
WRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNL
GRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDT
KLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGI
EFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPSLVYKWC
QGINNLQDVWETGDGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVV
INYKDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLHRASEMAGPPQMPNDFLSYQD
VATEVAHPVRLFCRYIERIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPR
DARMRLMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMSGFECRI
LPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTF
TKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVF
YTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMNHEEDQLIPNLYRYIQPWE
SEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGW
RVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFP
TWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLD
LTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHP
RKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDI
ERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGAKPLIQQAMAKIMKA
NPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEG
NLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEE
QPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVL
FNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEW
IKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQ
SQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDD
IKETGYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQT
VHLPNQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITC
SFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQ
SSWNYNFMGVRHDPNMKYELHLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYS
NT seq
7020 nt
NT seq
+upstream
nt +downstream
nt
atggcagcatttccatataggggtgcacctggacctaatccagtccctgttgctgttcct
gttcctgtacctgtacctgattatatgtctgaagaaaagttacaagaaaaagctaggaaa
tggcagcaacttcaggcaaaacgttatgctgagaagagaaagtttggatttgtggatgct
cagaaggaagatatgccccctgaacatgtacgaaagatcattcgtgaccatggtgacatg
acgaatagaaaattcagacatgacaaacgagtttatcttggagctttgaagtacatgcca
catgctgttctgaaactactggaaaacatgcctatgccatgggagcagatcagagatgta
tcggttctgtatcacatcacaggagcaatttcattcgttaatgaaataccatgggttatt
gaaccagtttacatatctcagtggggaaccatgtggattatgatgagacgtgaaaaacgt
gatagacggcatttcaaaaggatgcggtttcctccttttgatgatgaagagcctccgctg
gattatgcagataacatacttgatgtagagccacttgaagcaatacagatggaacttgac
tcagaagaggatggaccagtagctgagtggttgtatgaccaccagccattgaaagacaac
ccaaagtttgtaaatggatctacttatcggcgttggcagtttactttaccgatgatgtcc
actctttaccgcttggctaatcagttgttaactgatttagtggatgacaactacttctat
ctatttgatctcaaagcattttttacttctaaagctctgaacatggcaattcctggtgga
ccaaaatttgaacctcttgttcgggatgtgaatcttcaagatgaagactggaatgaattc
aatgatatcaacaagatcatcattagacagccaattcgaacagagtacaaaatagcattc
ccatacctgtataacaatctgccccatcatgttcatcttacctggtaccacacacctaat
gttgtgtttattaaaaccgaagatccagatctgccggcattctactttgatccattgatc
aatcctatttctcacagacactctgttaagagtcaggagccgttacctgatgatgatgaa
gagtttgaacttcctgatagtgtggaaccgttcttgaaagaaacaccattgtattctgac
aatactgcaaatggcattgccttgctttgggcaccaagaccatttaatctgcgatctggt
aaaacaaggagagcacttgacatccccttagttaagaactggtatcgggagcactgtcca
gctgggcagccagtcaaagttagagtttcttaccaaaaactcctgaaatactatgttctg
aatgcacttaaacacagacctccaaaagcccaaaagaaaaggtacttattccgttcattc
aagtcaacaaaatttttccagtcaaccaaactagactgggtggaggttgggttacaggtg
tgccgtcaaggctacaacatgctgaacttgctaattcaccgcaagaacctgaattatttg
catctggactacaacttcaatctgaagcctgtgaaaaccctcaccactaaggagcgtaaa
aagtcaagatttggtaatgcattccatttgtgtcgtgaggtgctacgtttgacaaagctt
gttgttgatagtcatgttcagtacagattggggaacgtggatgcttttcagttgtcagat
gggttgcagtatatctttgctcatgtgggacaattgacaggaatgtacaggtacaagtac
aagctgatgaggcaaatccgaatgtgcaaagatctgaaacaccttatctattacagattt
aacacggggccagttggcaaggggcctggctgtggattttgggctgctggctggagagtg
tggcttttcttcatgaggggcattactcctctgctggagaggtggttgggaaatttactt
gccagacagtttgaaggccgtcattccaagggggtagctaagactgtgaccaaacagcgt
gtggagtctcactttgacctggagttaagagcagctgtcatgcatgatatcctagatatg
atgcctgaaggaatcaagcaaaacaaggccagaacaatcttgcagcatctaagtgaggca
tggagatgctggaaagcaaatatcccttggaaggttccaggtctgccaactccaattgag
aacatgattctgcggtatgtaaaagccaaagctgattggtggacaaatactgctcattac
aacagggagcgcattcgtcgtggtgcaactgtggacaaaactgtttgcaaaaaaaaccta
ggtcgtcttaccaggttgtacttgaaggcagaacaagaaagacagcacaattacctaaaa
gatggcccctacattactgccgaagaagctgttgccatctatacaaccacagtgcactgg
ctggagagcagacgtttctcgcccattcctttccctccactttcatacaaacatgataca
aagcttctgatcttggctctggagagactcaaggaagcttatagtgtgaaatcaaggtta
aaccaatcacagagagaggaacttggtctaattgaacaggcttatgataaccctcatgaa
gctttgtccagaattaaacgtcacttacttacacagagagcttttaaagaggttggcatt
gaatttatggatctgtacagccatctggtgccagtttatgatgtggagcccctggagaaa
atcactgatgcttacctcgatcagtacttgtggtatgaagctgacaagcggcggttattt
cccccatggattaagccagctgatactgaaccgcctccatcgcttgtatataaatggtgc
cagggtatcaacaatcttcaggatgtgtgggagacaggtgatggtgaatgcaacgtcatg
ttagagtcacgatttgagaaaatgtatgagaaaattgatctgactttgctgaacagattg
cttcgtttgattgtggatcacaacattgctgattatatgacagctaagaacaatgttgtt
attaattacaaggacatgaaccacaccaattcctatggtattattcgaggactccaattt
gcctcattcatagtccagtactatgggctagtgctggatctgctggtattgggtctccat
cgagccagtgaaatggctggcccaccacaaatgccaaatgatttcctgagttatcaagat
gttgccacagaggttgctcatccagtcaggcttttctgcagatatattgagcgtattcac
attttcttcagatttacagccgacgaagccagggacttgattcagcgctacttgacagaa
catcctgatccaaacaatgagaacattgtaggatataataacaagaagtgttggccaaga
gatgcacgtatgagacttatgaagcatgatgtcaatctgggacgagcagtgttttgggat
atcaagaaccggctgcctaggtctgttaccaccattcagtgggaaaacagctttgtatct
gtctacagcaaagacaatcccaatttgctattcaacatgtcaggctttgagtgtcgcatc
cttcccaaatgtcgcacaagctatgaggaattcactcataaagatggagtttggaacttg
caaaatgaggttaccaaagagcgtacagcacagtgcttcctcagagtggatgatgaatct
atgcagcgtttccataacagagtacggcagatcctcatggcttctggttccaccactttc
accaagattgtgaacaagtggaacactgcactgattggtttgatgacctatttccgtgaa
gcagtggtcaacactcaggagctcttggacctgttggtgaaatgtgagaacaagatccag
acacgtattaaaattggtttgaactccaagatgccaagtcgtttccctcctgtggtgttc
tacactcccaaggagcttggtggtcttggaatgctctcaatgggccatgttctcatacca
caatctgatttgagatggtccaagcagacagatgtgggcatcactcatttccgatcaggt
atgaatcatgaagaggaccaactgattcctaatctttatcgttatattcagccttgggag
agtgaattcattgattcacaaagagtgtgggcagaatatgcactgaaacgacaggaagcc
atagcacaaaataggcggttaactttggaagatttagaagactcttgggatagagggatc
ccacgcattaacacattattccaaaaggatagacacactctggcttatgataagggttgg
agagtgagaactgatttcaaacagtaccaggtgttgaagcagaaccctttttggtggacc
catcaaagacatgatggcaagctatggaacttgaacaactatcgcactgacatgatccaa
gcactaggtggtgttgaaggcattctggaacacactctcttcaagggaacttactttcct
acatgggagggtttattctgggagaaggcaagtggctttgaggaatccatgaaatggaag
aaactgactaacgctcaacgatctggtttgaatcagattcccaacagaagattcactctt
tggtggtcaccaaccatcaacagagctaacgtttacgtaggtttccaggtgcagttagat
ttgacaggaatttttatgcatggcaaaatacccacgctcaagatttccttgatccagatc
ttcagagcccatttgtggcaaaagattcatgagagcattgttatggatctctgtcaggtc
tttgatcaagagttagatgctttggagattgagactgtgcagaaagagaccatccacccc
agaaagtcatacaaaatgaactcctcctgtgctgatatactgctgtttgcttcatacaag
tggaacgtttccagaccatcactacttgctgactcaaaagatgtaatggacagcacaact
actcagaaatactggatagatattcagttgcgatggggtgactatgactctcatgatatt
gagagatatgccagggctaagttcttggactatacaactgataacatgagtatctaccca
tccccaactggtgtattgattgccattgatcttgcctataacttgcacagtgcttatggt
aactggtttccaggtgccaagcctttgatccaacaggcaatggcaaagatcatgaaagct
aatccagctttgtatgtgttgagagaacgtattcgaaagggtctacaactgtactcttct
gaaccaactgaaccttacctttcctcgcagaattatggtgaactcttctccaaccaaatc
atctggtttgtggatgataccaatgtgtatcgagtcaccattcataagacttttgaaggt
aacttaacaacaaagcccatcaatggagccattttcattttcaaccccaggacaggacag
ctgttccttaaaattattcacacctcagtttgggctggacagaaacgtttgggtcagtta
gcaaaatggaagactgctgaagaagtggctgctttgatccgatcacttccagttgaagag
caaccgaaacagatcattgttacgaggaagggcatgttggatccactggaagtccatttg
ctggattttcccaacattgtgatcaaagggtctgagctgcaattgccttttcaagcttgt
ctgaaagtggagaagtttggtgatctaattttaaaggcaaccgaaccacaaatggtgttg
tttaacctctatgatgactggctgaagaccatttcatcctatactgcattctctcgactg
attttgattcttcgagcactccacgtgaataatgatcgtgcaaaagtaatcctgaaacct
gacaaaactacaataacagagcctcatcatatctggccaacacttactgatgaagaatgg
atcaaagtggaagtacagttgaaagatctcattctggctgattatggcaagaaaaacaat
gtaaatgtggcatcgctaactcagtctgagattcgtgatatcatcttgggaatggagatt
tctgcaccctctcaacagaggcaacagattgctgaaattgaaaagcagaccaaagagcag
tctcagctaacagccacacagacccgtactgtgaataagcatggtgatgaaatcatcact
tcaacaaccagcaactatgaaacccaaactttctcatccaaaactgagtggagagtcagg
gcaatatctgctgccaaccttcatcttcgaaccaatcacatttatgtttcctctgatgat
atcaaagagactggctatacctacatcctccccaagaatgtgctaaagaaattcatctgc
atttcagatttgagagcacagattgctgggtatctgtatggtgtgagtcctccagataac
ccccaggtgaaggaaatcagatgcatcgtaatggtaccacagtggggaacccatcagact
gtgcatctgcctaatcagctaccgcagcatgaatacctgaaggaaatggagcctcttggc
tggattcacacccaaccaaatgagtctcctcagttgtcgccacaagatgtcaccacccat
gcaaaagtaatggctgacaacccatcctgggatggagaaaagaccatcattataacatgc
agttttactccaggttcttgtacgctgactgcatacaagctcactccaagtggttatgag
tggggtagacagaacacagacaaaggcaataaccccaaaggatatctgccctcccactat
gaaagagtgcagatgttgttatcagatagattccttggtttcttcatggtacccgggcag
agttcctggaactacaacttcatgggtgtacggcatgatccgaacatgaaatacgagctg
catttggccaaccctaaagaattctaccatgaagttcacagaccatctcactttctgaac
tttgcttcgctgcaagagggtgagatctacaatgcagacagagaagacatgtactcctag
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integrated database retrieval system
