Hemitrygon akajei (red stingray): 140732897
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Entry
140732897 CDS
T11019
Symbol
smarcb1b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1b isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03082
ATP-dependent chromatin remodeling
haka03250
Viral life cycle - HIV-1
Brite
Protein phosphatases and associated proteins [BR:
haka01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
140732897 (smarcb1b)
Transcription machinery [BR:
haka03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
140732897 (smarcb1b)
SWI/SNF complex
140732897 (smarcb1b)
Chromosome and associated proteins [BR:
haka03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
140732897 (smarcb1b)
PBAF complex
140732897 (smarcb1b)
SWI/SNF complex
140732897 (smarcb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
140732897
NCBI-ProteinID:
XP_072911665
LinkDB
All DBs
Position
9:19343490..19436045
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AA seq
382 aa
AA seq
DB search
MRMGWRGGKMALSKTFGQKPVKFQLEEAGEWYMIGSEVGNYLRMFRGSLYKRYPSLCRRL
ATVEERKKIVASSHDHGYTTLATSVTLLKAAEVEEILEGNDEKYKAISISTEPPSYLREQ
KAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMSRDKKRTFPLCFDDHDPAVIHENATQS
EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAIASAIRQ
QIDSYPMDTILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGL
GGEFVTTIAYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEK
KIRDQDRNTRRIRRLANTAPAW
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatgggctggcgcggagggaagatggcgctgagcaaaacgttcgggcagaagcct
gtgaagttccagctggaggaggcgggcgagtggtacatgatcggttctgaggttggtaac
tacttgcgtatgtttaggggctccttgtataagcggtatccatctctttgtcggcgactg
gccactgttgaagaaaggaagaaaattgtagcatcgtcgcatgatcatggttataccact
ttagctaccagtgtgacgcttcttaaggctgcagaagttgaagaaatcctggaaggtaat
gatgaaaagtacaaggccatctcaatcagcacggagcccccttcctatctcagggagcaa
aaggcaaaacgcaacagccagtgggtgcccaccctgcccaacagctcacatcatctggac
gcagtaccgtgttccacaactatcaaccgaaaccgaatgagccgggataagaagaggaca
ttccctctctgttttgatgaccatgaccctgcagtgatccatgaaaatgccactcagtct
gaggtgctggttcccattcgtcttgatatggagatagatgggcaaaagctgagggacgcc
ttcacgtggaacatgaatgagaagttaatgaccccagagatgtttgctgagattttgtgt
gacgacctggatttgaaccctttgacctttgtccctgccattgcttcagcgattcgccag
cagattgattcctacccgatggacaccatactggaggatcagtcggatcagagggtcatc
atcaagctgaacatccacgtgggaaacatctctctggtggatcagtttgagtgggacatg
tcagagagggagaattcacccgagaagtttgctctgaagctgtgctccgagttgggtctg
ggaggagaatttgtcaccaccatcgcttacagcatcagaggccagctgagctggcatcag
cgcacctacgccttcagtgagaaccccctgcccacggtggagatcgccatcaggaacaca
ggcgatgctgaccagtggtgcccgctgctggagaccctcaccgacgcagagatggagaag
aagattcgtgatcaggaccgcaacacccggaggatcaggcgtcttgcgaataccgcgccg
gcctggtaa
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