Hemitrygon akajei (red stingray): 140733249
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Entry
140733249 CDS
T11019
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140733249 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haka03019
]
140733249 (hbs1l)
Messenger RNA biogenesis [BR:
haka03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
140733249 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
140733249
NCBI-ProteinID:
XP_072912425
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Position
9:72979361..73151275
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AA seq
940 aa
AA seq
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MARHRNIRGLKYDEDFEDDDVYGQSVEDDYCISPATAAQFIYKRDDYNSRAFAEEPLEED
DEFEDKVEESSHSNMPLSGVDQVRLYACLDKMREVLGESASEQVMVDAVLNCEYDAHKAL
DLVLSEECKPTPDKKNQITASSRKSTIGDPFHSSKLVVSKHTDSCFPVPLLYDADSSSTF
DLSILLSTKSEQSCVSSAPVVAHESINNESANEGDQTLTQSVSLSEMIKETPNLLQTHTR
VPNGPFADETTINSQRGINLADLIKDCEGNSQDLNPLILSVLPNVMDCTRLSTDKTKLSL
STQNKSEGILQPAPTELLFKVGDTNHIQPTYLTLSSQNPECLVPSLKGLNLIEQLNQHQK
KNDGRNDSWDTAGQSSLKDIVEMHGSLSFPQCGSPSLADLIEEHKKGKAREQPTRVDADI
IPKVAKMTVSGKQVTGFNIPRANVDENDHLQKGAVPNEVFPSALLETSLKPNAVGSVSPL
NEETTVVQTPSKVSTKTRQQLDVKVELEKRQGGKQLLNLVVIGHVDAGKSTLMGHVLFLL
GNVNKRVMHKYEQESKKAGKASFAFAWVLDETGEERERGVTMDVGVTKFETKTKVITLMD
APGHKDFIPNMITGAAQADVAILVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVA
VNKMDQVKWQPERFKEISIKLGHFLKQAGFKDSDVAYVPTAGLTGENLTARSQVAELRAW
YNGPCLLEQIDSFKSPQRPVEKPFRLCVSDVFKDQGSGFNVAGKIEAGYVQTGDRVLVVP
PNETCTVKGITLHEEPLDWAAAGDHVILTVTGVDIIKINVGCIFCDPKAPIKTCTRFRAR
VLIFNIDIPVTQGLPVLLHYQTLSEPCTIRRLVSVLHKSSGEVLKKKPKCLTKGQNALIE
LQAQRPVSLELYKDFKELGRFMLRYGGSTIAAGVVTEIKE
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggcacagaaatattcggggtctcaagtatgatgaagattttgaagatgatgat
gtctatggccagtcggtagaagatgactactgtatttcccctgcaacagctgctcagttt
atttacaaaagagatgattacaacagcagagcctttgcagaggagcctctagaagaagat
gatgagtttgaagataaggttgaagagtcttcccacagtaacatgcccttgagtggggtt
gaccaagttcgactgtatgcctgccttgataaaatgcgagaagtcttgggagaatccgca
tcggagcaagtgatggttgatgcagtactgaactgtgaatatgatgcacataaagccctc
gaccttgtactttctgaggaatgcaagcccaccccagataaaaagaaccaaattacagct
tcttcccggaaatccaccataggagacccatttcattcatcaaaattagtagtttccaag
catacagattcatgttttccagtacccttattatatgatgctgatagttcttcaactttt
gatttgagtattctcttatcaactaagtctgagcaaagttgtgtgtcgtctgctcctgtg
gtagctcatgaatctattaataatgaaagtgcaaatgagggtgaccaaaccctaacacag
agtgtttctttgtcggaaatgatcaaagaaaccccaaatttattgcagacacatacaagg
gtaccaaatggcccatttgctgatgagactacaataaattcacaaagaggtattaacctt
gcagatctaattaaagactgtgaaggtaatagccaagatttgaatccactcattttatct
gtattacctaatgtgatggattgtactaggctttccacggacaaaaccaagttgtcttta
tcgacacaaaataagtctgaaggaatcttgcagcctgcacctacagaattgctctttaaa
gtaggggataccaatcatatccagcctacctatttaactttgtcatcacaaaaccctgag
tgtttagtaccatcacttaagggtttgaatctgattgaacagctgaaccaacatcagaaa
aaaaatgatggacgtaatgattcatgggatacagcaggtcaaagcagtctgaaagacata
gtagaaatgcatggaagtttgtcctttcctcaatgtggaagtccatctctagcagatctc
attgaagaacataaaaaaggcaaagcaagggagcaacctactagagttgatgccgacatc
ataccaaaagtagcaaaaatgacagtatctggaaaacaagtaacaggatttaatataccg
agagcaaatgttgatgagaatgaccacctccaaaagggtgcagtgccaaacgaagttttt
ccatctgccctgctggagacttctctgaagccaaatgctgtaggttctgtttccccttta
aatgaagaaacaacagtggttcagacaccaagcaaagtctctaccaaaacaagacagcag
cttgatgtgaaagttgaacttgaaaaaaggcaaggaggaaagcagcttctgaatctggtt
gttattggccatgtagatgcaggcaaaagtaccttaatgggccatgtactctttcttctg
ggcaatgtaaacaaacgtgtcatgcacaaatacgaacaagaatcaaaaaaagcaggaaaa
gcctcatttgcctttgcttgggttctggatgaaacaggtgaagaaagggaaagaggtgta
acaatggatgttggcgtgacaaagtttgaaactaagacaaaagtgatcacattaatggat
gcaccaggtcacaaagacttcattccaaatatgattacaggtgctgcgcaggctgatgtt
gcaatcctagttgtagatgcaagtcgtggagaatttgaggctggatttgaggctggtggg
cagacaagagaacatgcattgcttgttcgctctcttggtgtaacacagttggctgttgct
gttaacaagatggatcaggtgaaatggcaaccagaaagatttaaagagatttctatcaaa
cttgggcacttcttgaagcaagcaggtttcaaagattctgatgttgcttacgttcctaca
gctggattgactggcgagaatttaactgctagaagtcaagttgcagaactcagagcctgg
tacaatggaccttgcctgttagagcagattgattcttttaaatcacctcaaagaccagtg
gaaaaaccatttagattgtgtgtgtcagatgtttttaaagatcaaggatcaggattcaat
gttgcaggtaaaattgaagcaggatatgttcagactggagatcgagtgctggttgtccct
ccaaatgaaacttgcacagttaaaggaatcaccttgcatgaggagccactcgattgggct
gcagcgggggatcacgtcattctcactgtcactggtgtggatattataaaaataaatgtg
ggatgtattttttgtgatccaaaagcaccaataaaaacatgcacaaggtttagagctaga
gttcttattttcaatattgatattccagtcacgcaaggtttaccagttttgttacactac
caaacattaagtgaaccatgtacaatcagaagactggtgagtgtcctgcacaagagttca
ggggaggtgcttaagaaaaaaccaaaatgtctgactaaagggcagaatgccctgatcgag
ctacaggcccagagacctgtttctttggaactctacaaagactttaaagagttgggtcgt
tttatgttacgttatggtggctccaccatagcagcaggagtggtcactgagataaaagaa
tga
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