Hemitrygon akajei (red stingray): 140733559
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Entry
140733559 CDS
T11019
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140733559 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
haka03041
]
140733559 (snrnp200)
Enzymes [BR:
haka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140733559 (snrnp200)
Spliceosome [BR:
haka03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
140733559 (snrnp200)
Complex C
U5 SnRNP specific factors
140733559 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DrmE_N
Motif
Other DBs
NCBI-GeneID:
140733559
NCBI-ProteinID:
XP_072913143
LinkDB
All DBs
Position
1:188919444..188982697
Genome browser
AA seq
2138 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGSRMGDKAQRTK
PQLQEERRAKRRKRDEDRHDMNKMKGYTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKLRDKERRKEIEMLLGQLEDTRYHVLVNLGKKIS
DYGGDKEVQNMDDNIDETYGVNVQFESDEEEGDEDAFGEVREEASDEDTEGEEADISCTL
SANLGTAGDVLSAKKKDLHPRDIDAFWLQRQLSRFYDDAIMSQKKADEVLDILKTAGDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIQNKMEADAELSKIL
YKLQETEKEDIIREERSRRERVRQSRVDTDLEAMDLDREGEILAPRQVLDLEDLAFTQGS
HLMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFSSDEQLISIEKMPKYTQAAFEGFKT
LNRIQSKLCKAAMETDENLLLCAPTGAGKTNVALMCMLREIGKHINLDGTINVDDFKIIY
VAPMRSLVQEMVGSFSKRLVSYGISVAELTGDHQLCKEEINATQVIVCTPEKWDIITRKG
GERTYTQIVRLMIIDEIHLLHDDRGPVLEALVARTIRNIEMTQEDVRLVGLSATLPNYED
VATLLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKVMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
SFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDVLQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMITKLPDM
LNAEIVLGNVQTAKDAVNWLGYTYLYIRMLRTPNLYGISHDELKNDPLLEQRRLDLIHTA
ALILDKNNLVKYDKKGGNFQVTDLGRIASHYYITHESMATYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMAD
MVYVTQSAGRLMRCIFEIVLNRGWAQLTDKTVNLCKMIDKRMWQSMSPLRQFRKLPEEVI
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYIHQFPKLELSVHIQPITRSTLKV
ELTITPDFQWDEKIHGSSEAFWILVEDVDSEVILHNEYFLLKAKYAQDEHLVMFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFEHL
YQDKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALADQVYTDWYEKFQQKLGKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNVNLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMSKPVYHAIMKHSPKKPVI
VFVPSRKQTRLTAIDILTFCAADIQPQRFLHCTEKDLIPYLEKLNDNTLKETLANGVGYL
HEGLNLTERRIVEQLFRSGAVQVVVASRSLCWGMNISSHLVTIMDTQYYNGKIHAYVDYP
IYDVLQMVGRANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSQLVENTLNDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYENIPI
RHHEDNLLRQLYQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHVKRCTDRGTD
SIFDIMEMEDDERNMLLQLTDAQMMDVARFCNRYPNIELSYEVIDKENIKSGSSVVVMVQ
LEREEEVTGPVIAPLFPQKREEGWWVVVGDPKTNSLISIKRLTLQQKAKVKLDFLAPAPS
AQHYTLYFMSDAYMGCDQEYKFSIDVKEAESEGESDSD
NT seq
6417 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgctcgcagtttgcagtatgagtataaagcgaattccaatcttgtg
ttacaagcagatcgttccttaattgaccgaacgaggcgagatgagccaacaggagaagtg
ttgtcactggtgggaaagctggaagggtcccggatgggagacaaagctcagagaacaaaa
ccacagctgcaagaggagaggcgagcaaagcggaggaagcgtgatgaagaccgtcatgac
atgaataaaatgaaaggatatacactgctgtcagagggcattgatgagatggttgggatt
gtgtacaaaccaaaaacaaaagagacaagagagacctatgaggtgctacttagcttcatt
caggctgctcttggtgaccagccccgtgatattctttgtggagctgcagatgaggtcttg
gctgtattgaaaaatgataaactgcgcgataaggaacggcgaaaggagatagaaatgctg
ctgggacaattggaagatactcgctaccatgtgctagtaaacttgggaaaaaaaattagt
gactatggaggagacaaagaggttcagaatatggatgacaatatcgatgagacgtatgga
gttaatgtgcagtttgagtctgatgaggaggagggagacgaagatgcatttggtgaagtg
cgggaagaagcatcagatgaggacacagaaggcgaggaagcagatattagctgcactctt
tctgctaacctgggtactgccggagatgtgctcagcgcaaagaagaaggaccttcatccc
agggacatcgatgctttctggctccagagacagctcagtcgcttctatgatgatgctatc
atgtcacaaaagaaggccgatgaagtgctggatattcttaagacagctggagatgatcga
gagtgtgagaatcagcttgtcttgcttcttggatttaacacttttgattttatcaaagtc
ttgcgtcaacaccgcatgatgattctgtactgcactctactggctagtgcccagagtgaa
gcagagaaggagaggatccagaataagatggaggcagatgcagaactttccaagattctc
tataaacttcaggaaactgaaaaggaggacataattcgggaagaaagatctcgtagagaa
cgagttcgccagtctcgtgtggatacagaccttgaagcaatggatctcgacagagaaggg
gagattctggcccccagacaagttttggatttagaagacctggcctttacacagggaagt
cacctcatggcaaacaagcgatgtcagctaccagatggctcgttccgcaagcagcgcaag
ggatatgaggaagttcacgtaccagctcttaagcctaaacccttcagttcagatgagcaa
ctgatatccattgagaagatgcccaagtatacacaagctgcatttgaaggctttaagaca
ctaaatcgaattcagagtaaattatgtaaggcagccatggaaacagatgaaaatcttctg
ttgtgtgctcccactggagctggtaaaacaaatgtagctctaatgtgcatgttacgtgag
attggaaagcatatcaacctggatgggaccataaatgtggatgacttcaagattatttat
gtggcaccaatgagatctttggttcaggagatggtgggcagtttcagtaagcgtttagtg
agttacgggatcagtgttgcagagctgacgggagaccatcaattatgtaaagaggagatc
aatgcaacccaggtgatagtgtgcaccccggagaaatgggatatcatcactcgtaaagga
ggagagcgtacctacactcaaatagtgcgactcatgatcatcgatgagattcatcttctg
catgacgatcgtggtccagtactggaggctttggttgcccggacaatcagaaacattgag
atgactcaggaagatgtacggttagttggattgagtgccacactgcccaactatgaagat
gttgctacgctgctgagagttgatccagctaagggccttttttacttcgataacagtttt
cgtcctgttcctttggagcagacatacgttggaatcacagagaagaaagccatcaagcgt
ttccagattatgaatgagattgtgtatgagaaggtgatggagcatgctgggaagaatcag
gtgttggtgtttgttcattctcgcaaggaaactggaaagacagcacgagcaatccgagat
atgtgcctggagaaagatacactgggtttgttcctgcgagagggctcagcttccacagag
gtgctgcgcacagaggcagaacagtgcaagaatctggagttgaaggacctactcccctac
agttttgctattcaccatgctgggatgacgagagtggatcgaacactggtagaagatctg
tttgctgacaggcacattcaggtgctggtgtccacagcaactctggcttggggtgtgaat
ctgcctgctcacactgttattattaaaggcacacaggtgtacagcccagagaagggccgc
tggactgaactgggtgcactggatgtacttcagatgttaggccgtgcaggacgaccacag
tatgacacgaagggtgaaggtatcctgatcacgtcgcacggcgagttgcagtattacctg
tcccttctcaaccagcagctgccgatcgagagccagatgatcaccaaactccccgacatg
ctcaatgcagagattgttcttggaaacgttcagactgccaaggatgccgttaattggttg
gggtacacatacctttatatccggatgttgagaactcccaatctatatgggatatcgcat
gatgagttgaagaacgatcccctgctggaacagcgtagactagatctcattcacactgcc
gccctcatccttgacaaaaacaaccttgtaaagtatgataaaaaaggtggaaactttcag
gtcactgatctgggccgcattgcaagtcactattatatcacacatgaaagtatggccacc
tacaatcagcttctgaaacccaccctcagtgagattgagttgttcagagtcttttcactg
tcatcagagttcaagaacatcactgtgcgagaggaagagaaacttgaactgcagaaattg
ttggaacgtgttcctattcccgtcaaggagagcattgaagagcctagtgcgaagatcaat
gtgttgctgcaagcctacatctcccaactgaagctggagggatttgcactgatggcagac
atggtgtatgtcactcagtctgcaggccgtctgatgcgttgcatttttgaaattgtttta
aatcgaggttgggcccagctgacagacaagactgtgaatctctgcaaaatgattgacaaa
cgaatgtggcagtcaatgtcgcctttgcgacagttcagaaagctgcctgaggaagttatc
aagaaaatagagaagaagaacttcccatttgagcgactgtacgacttgaatcataatgaa
atcggtgagttgatccgaatgccgaagatgggcaagacaatccacaagtacatccaccaa
ttcccgaaactagaactgtcagttcacattcagccaatcacacgctcaacgttgaaagtg
gaactgaccatcacacctgacttccagtgggatgaaaagattcacggatcctccgaggca
ttctggatccttgttgaggatgtggacagcgaagtcattctacacaatgagtacttcctg
ctgaaagcaaagtatgcccaggatgagcacctggtcatgttctttgtacctgtctttgaa
cccctccctccacaatatttcatcagagttgtatccgatcgctggctctcctgtgagact
caacttcctgtttcattccgacatctgattcttccggagaagtatcctcctcccacagag
ctcctggatttacagccattgcctgtgtcagcgctgcggaacagtgcttttgagcacctc
tatcaggataagttccccttcttcaacccaatccaaacacaagtcttcaacgcagtttat
aacagtgacgacaatgtgtttgtcggggcccccacgggcagtgggaagactatttgtgcg
gagtttgctatcctgcgaatgctcttgcagaactctgaaggccgctgtgtgtacattact
ccaatggaggctcttgctgaccaggtttatacagactggtatgagaagtttcaacaaaaa
ctgggcaagaaagttgtcttgctaactggggagaccagcacagatctcaaactgctgggc
aaagggaacatcatcatcagcaccccagagaaatgggacatcctttccaggcgatggaaa
cagaggaaaaatgtccagaacgtaaacctctttgtagtggatgaagttcatctgattggt
ggagagaacgggcccgttctggaagttatttgttcccgaatgcgatacatctcctcccag
attgagcggccgatcaggattgtggctttaagttcgtcgttatcaaatgcaaaagatgtg
gcacattggcttggctgcagcaccacagcgactttcaacttccatcccaacgtgcggccc
gtcccactggagttgcacatacagggcttcaatgtcagccacactcagacacgtctgttg
tccatgtccaaacctgtctaccatgccatcatgaagcactcgcccaagaaaccagtcatt
gtctttgtcccctcccgcaagcagaccaggctgacagccatcgatatcctgacgttctgt
gctgctgacattcagccacaaagatttctgcactgtacagaaaaggacttgattccatat
cttgagaaactcaatgacaacacactaaaggagactcttgctaatggagtcggttatcta
cacgagggactcaacctgacagaacgtaggattgtggaacagcttttccgttctggtgcc
gtgcaggtggtggtggcatctcgtagtctgtgttggggaatgaatatctcctcccacctt
gtcaccatcatggatactcagtactataatggcaaaattcatgcgtatgtggattatccc
atttatgatgttctgcagatggtgggacgtgctaaccggcccttacaggatgatgaagga
cgctgtgtaataatgtgtcagggctcaaaaaaggatttcttcaagaagttcttgtatgag
ccactaccagtcgagtcccatcttgaccattgcctgcacgaccatttcaatgctgagatt
gtcaccaaaaccatagaaaacaagcaagatgctgtggactatctgacttggaccttcctt
taccgaagaatgacccagaatccaaattactacaacttacagggtgtgtcccaccgacat
ctttcggatcatctctcacagttggtggaaaatacccttaatgacctggagcagtccaaa
tgcatcagcatagaggatgagatggatgtggccccactgaatttgggaatgatcgcagcg
tattattacatcaattacaccaccattgagctgttcagtatgtctctgaacgccaaaaca
aagattcggggcctcattgaaatcatctccaacgcagccgagtatgaaaacatccccatc
aggcaccatgaggacaatctactgcgacagctgtaccagaaggttcctcacaagctgaac
aacccgaaattcaatgacccacacgtgaagacgaacctcctcctgcaggcccacctttcc
cgcatgcagctgagtgctgagctacagtctgacacagaggagattctcagcaaggcgatc
cgcttaatccaagcttgtgtggacgtgctgtccagcaacggctggcttagtccagctctg
gctgcgatggagctggcccagatggtaacccaagccatgtggtccaaggactcgtacttg
aagcaacttccacacttcacatcagagcatgtcaaacgctgtacagacagggggactgac
agtatcttcgatatcatggaaatggaggacgatgagcgcaacatgctccttcagctcacc
gatgcacagatgatggacgttgcccgattctgtaaccggtatcctaacattgagctttcc
tatgaggtgatcgataaagaaaacatcaaaagtggctcttcagtcgtggttatggtacaa
ttggagcgtgaggaagaagtgaccggacctgtcattgcacctctattccctcagaaacgc
gaggaaggatggtgggtggtggttggtgaccctaagacaaacagcttgatatcaatcaag
aggctgaccctgcaacagaaagctaaggtgaaactagattttcttgctccagctcccagt
gcccaacactacacactgtatttcatgagtgatgcgtatatgggctgtgatcaagagtac
aagtttagcatcgatgtcaaagaagcagaaagtgaaggcgagagtgactctgactaa
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integrated database retrieval system
