Hemitrygon akajei (red stingray): 140734220
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Entry
140734220 CDS
T11019
Symbol
col4a6
Name
(RefSeq) uncharacterized protein col4a6 isoform X1
KO
K06237
collagen type IV alpha
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka04382
Cornified envelope formation
haka04510
Focal adhesion
haka04512
ECM-receptor interaction
haka04518
Integrin signaling
haka04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
140734220 (col4a6)
04518 Integrin signaling
140734220 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
140734220 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
140734220 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
140734220 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
haka04147
]
140734220 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
haka00536
]
140734220 (col4a6)
Exosome [BR:
haka04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
140734220 (col4a6)
Glycosaminoglycan binding proteins [BR:
haka00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
140734220 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
140734220
NCBI-ProteinID:
XP_072914003
LinkDB
All DBs
Position
10:complement(23292239..23701400)
Genome browser
AA seq
1704 aa
AA seq
DB search
MSSGILLIVLGCLAADLVRAGIKTGYDGPCDGRDCSAGCKCFPEKGARGPPGPLGPQGRS
GPPGFPGPEGITGPKGEKGNQGPPGTSGMKGEKGPIGVPGFVGTNGIPGHPGQQGPRGFP
GLDGCNGTKGDPGSDGFKGYAGIPGLQGEVGRKGAKGEPAYYYSPSAGTRGEPGLPGLDG
FPGPKGLPGPYGPQGSGGTPGIPGRPGPPGSRGQKGNMGLGFQGQKGTKGDVGLPGPPGP
PPATGTLEFARPAGFPKGDRGEKGDKGLPGPPGRPGFSGLPGYTDVLRSKGEKGVPGLPG
ARGVSGRDGPPGIPGKKGQPGFPGSSGRDGFPGIKGDQGDVGPPGFTVYADSRGIVGKGP
PGDPGPPGYPGAPGIQGFQGPPGLPGFAGAPSRIPGSKGREGFPGIPGPKGERGAPGRAS
YSLRAIPGQPGLPGPPGPAGPPGLRKTAGNRFPGERGRPGLPGPRGPPGFSGSKGYKGEP
GDCVCDGMITGGHRGPAGSPGEPGRSGVNGGKGRCGDPGPPGDPGPRGKPGSPGVPGGQG
RKGQKGDSSFISAKGQKGDRGVPGPRGPSGSPGNPGRDGFPGLSGPPGLPGDRRPGYQGD
KGFPGTPGPRGPPGARGEPGNGLPGPPGFPGPPGDPGLDGSAGSPGYPGPPGDCCCGETA
GEGDRQRQGGITLPCVIPGLGGEIGLPGPTGLPGPKGRPGFPGNPGRPGPNGLKGIPGSP
GFLGEAGFPGFPGPRGDDGLPGLSGLDGNEGPPGKIGLPGSPGLKGLPGDVYGAIQGNPG
QSGQPGNPGLKGAPGSPGLPGPRGADGRPGRQGSKGERGDPGLLGLRGLPGSPGPSIRIP
PLGLSGEVGKVGLPGRPGFPGQKGFTGDRGPSGPSGMKGFPGVPGNPGFPGRPGPPGPPG
EPGTANYFRPGPKGEAGCSGVIGFPGMPGPPGLPGFDGRKGETGSPGRPGYPGSPGRTGE
KGDRGNRGPPGIPYFVDFLTPAPQGNPGSPGVPGFPGPRGDRGFPGPPGSPGLPGLRGLP
GREKGKPGDFGIPGSPGAPGLPGPKGFSGIFGFPGMVGEKGYDGQPGRPGRPGELGLSGP
KGEPGELSRALTYGGRKGDPGQPGYPGARGPDGLPGDPGFPGSPAVNGVKGFPGEPGRPG
SPGSPGIQGPPGNPGYQGLRGPPGPPGRPSQFSYPGQKGLLGSPGLDGLNGLPGPKGLPG
KPGAILAALPGNPGSPGRKGERGTPGLGIGRPGYPGPKGLRGDPGRAGPLGLPGRPGAPG
ITIPSNVPGKQGDPGLPGVPGQMGSQGFPGPPGPLPTLLIKGDPGSPGYSGPSGPPGMPG
DSGYPGNPGIQGSPGLKGQTSEPGRMGFPGTDGPAGEPGYPGPRGDPGRRGLPGRPGAPG
TPTRGDGIPGYPGDVGLPGYPGSPGPQGDQGSPGFPGFPGLKGEPGKPGRVGPNGLPGSP
GPVGDPGPKGYPGLPGSEGYPGNKGLPGRPGDPSRGVSVGYTLVKHSQSDTVPVCPLGMN
KLWDGYSLLYVEGQEKAHNQDLGMAGSCLPRFTTMPFLYCNVDEVCYYASRNDKSYWLST
TAPIPMMPVSSFLIQNYISRCSVCEVPSQAIAVHSQDITIPQCPGGWRSLWIGYSFLMHT
AAGPEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVEASRQFEESP
PSETLKAGQLRTRVSRCQVCIKYL
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcggaattctgctaatcgtcctgggttgcctggctgctgatcttgtccgagcg
gggattaagactggctatgatgggccgtgtgatggacgagactgcagtgctggttgcaaa
tgtttcccagagaaaggggcaaggggcccaccaggaccgcttgggccacagggacgcagt
gggccgccagggtttcccggaccagaggggataactggaccgaagggcgagaaggggaac
caaggtccgccaggcactagcggaatgaaaggagaaaagggtccaatcggtgtgccagga
tttgttgggacaaacgggatcccaggtcatccaggtcaacaaggtccgagaggttttcct
ggtctggatgggtgcaacggcaccaaaggagatcctggttccgatggttttaaaggatat
gctggaataccaggattgcagggtgaagttggtcgaaaaggtgccaaaggagagccagcc
tactactacagcccgtccgctggaacaaggggtgagcctggcctcccaggtttggacggg
tttcctggtccaaaaggtttacctggtccctacggtccccagggatctggaggcacccct
ggtattccaggtcgccctggcccaccgggatctcggggacagaagggtaacatgggatta
ggattccaaggacagaaagggacaaagggagacgtgggtcttccaggtcctccgggccct
ccaccagccaccggaacgcttgagtttgctagaccagctggatttccaaaaggggaccga
ggtgaaaagggcgataaagggttacctggtcctcctggaaggcctggattcagtggtcta
ccgggttatacagatgtactcagatcaaaaggagagaaaggagtccctggtctcccaggc
gcaaggggagtttcaggccgggatggaccacctgggattcctggaaagaagggtcaaccg
ggctttcctgggtcaagtggacgagacggattcccaggaattaagggtgatcagggcgac
gtgggtccgccagggttcacagtgtatgcagattcacgtggcattgttggtaaaggccct
cctggggatccaggcccaccaggatacccaggtgctccaggaatccaaggttttcaaggc
ccaccaggattacctggatttgcaggagctccgtcacgaattccaggctcaaaaggtcgt
gaaggattcccaggaattccaggtcctaagggagaaagaggtgcaccaggaagggcgtca
tattcactacgtgcaattccaggccaacctggtctaccaggccctccaggaccagcagga
ccaccaggactaagaaaaactgctggcaacagattccctggagaacgtggacgtcctggc
ttacctggaccaagagggcccccagggttcagtggaagcaaaggatataaaggtgaacca
ggagattgtgtctgcgatggcatgattacaggaggacatcgaggtcccgctggttctcct
ggagagccaggaaggtctggagttaatggtggcaaaggacgatgtggagacccaggacca
ccaggggatccagggccaagaggcaaaccaggttctccaggtgtaccaggagggcaaggt
cgtaaaggacaaaaaggagactcatcatttatatcggcaaaaggacaaaagggagatcgt
ggtgttccagggccacggggaccttctggtagtccaggaaatccaggaagggatggcttt
ccaggtttatcaggacctcctggtttaccgggagaccgtagacctggttatcagggtgat
aaaggattcccgggcacccctggcccaaggggacctccaggagcaagaggtgagccagga
aatggactccctggacctccaggcttcccaggccccccaggtgatccaggattggatggt
tcagcaggatcaccaggttatccaggaccaccaggtgactgttgctgcggggaaaccgct
ggcgaaggcgaccggcagagacagggaggaatcacacttccctgtgtgatcccaggcctc
ggaggtgagataggattgccgggacctacaggactgccaggtccaaaaggtagaccaggc
tttccaggcaatccggggcgaccaggaccaaacggactgaaaggaatccctgggtctcca
ggctttttgggtgaagcaggctttcctgggtttcctggaccacgaggtgatgatgggcta
ccaggtctttctggattggatgggaatgaaggacctcctggaaaaataggtcttcctggt
tctccaggcctaaaaggtctcccaggagatgtctatggtgctatacagggtaatccaggt
caatctggacagcctggtaatccaggattgaaaggagctccaggaagccccggtttgcct
ggtccaagaggtgctgatggcaggccaggacgtcaaggcagtaaaggtgaaagaggggat
ccaggcctccttggtctccgaggtttgccaggatctccaggtccaagcataaggatacct
cctctgggtctctcgggagaagtaggcaaggtcggcctgcctggacgaccaggttttcca
gggcaaaaaggattcacaggagaccgtggaccttcagggccttctggtatgaagggattc
ccaggagttccaggaaacccaggtttccctgggcgaccaggccccccaggtcctccagga
gagcctggtactgctaattatttccgacctggaccgaaaggtgaagcgggctgcagtggt
gtaattggatttccaggaatgcctggccctccaggcctgcctggatttgatggaaggaag
ggagaaactggcagcccaggaagaccaggctacccgggctccccgggcaggactggagag
aaaggtgatagaggcaacagaggaccacctggaataccatattttgtggacttcctaaca
cctgcaccacagggaaaccctggcagtcctggagttccgggtttccctggccctagagga
gataggggctttccaggacctcctggttctccgggcttaccaggactgagaggtctccct
ggtcgtgagaaaggaaaacctggagattttgggatcccaggttctcctggagcaccagga
ctaccgggtccgaaaggcttcagcggcatttttggtttccctggaatggttggagaaaag
ggttatgatggacagcctggtcgtcctgggcggcctggcgaattaggactcagtggtccg
aaaggtgagcccggtgaactgtcaagagcactgacgtacggaggacggaagggagatccg
ggacagccaggatacccaggtgcaagagggccagatggtttgcctggtgaccctggcttc
cccggtagcccagcagtcaatggagtcaagggatttcccggagaaccaggtcgaccgggt
tccccaggttctccagggattcaaggccctccaggaaatccaggctaccaaggacttcga
ggacctccaggtcctccaggacgtccatcccaatttagttacccaggacagaaaggactc
ctaggttctccagggctagatggtttgaatggcttgcctggacctaaaggcctaccagga
aaaccaggggctattttggcagcattaccaggaaatccgggctcaccaggccgaaagggt
gaaaggggaacgccaggcctgggaataggaagaccaggatatcctggaccgaaaggactt
cgaggagatccagggcgtgctggacctttgggtcttccagggaggccaggtgccccaggt
attactattccttcgaacgttcctgggaaacaaggtgaccctggtctacctggagtacca
ggtcaaatgggttctcaaggttttcctggacctccaggaccactacctaccctgctgata
aaaggagatcctggaagtccaggttattcagggccctctggaccaccaggtatgccagga
gatagtggatatccaggaaacccaggaattcaaggttctccaggattaaagggtcaaaca
tcagaaccaggtagaatgggattcccaggaacagatggtcctgctggtgagccaggctat
cctggaccacgaggggatcctggtcggagaggtttaccagggcgtccaggtgccccaggg
acaccaacacgaggagacgggattcccgggtatccgggtgatgttggtctgccaggatat
cctggatcacctggccctcaaggagaccaaggtagccctggttttccaggatttccaggt
ctcaaaggtgagcctggaaaacctggcagagtgggaccgaatggattacctggctctcca
ggtcccgtgggagatccaggtccaaagggatatcctggattacctgggtcagagggttac
ccggggaataagggtttgccaggacggccgggagatccatcccgtggtgtgagcgtgggc
tacacactggtaaagcatagtcagtcagatactgtgccggtctgcccgttggggatgaac
aaactatgggatggttacagcttgttgtatgtggaagggcaagaaaaggcacataaccag
gatctgggaatggctggttcgtgcttgcctcgtttcaccacgatgcctttcctgtattgt
aatgttgacgaggtctgctactatgcaagcaggaatgacaagtcctattggctttccacc
accgctcccattcccatgatgccagtctccagcttcctgatccaaaattatatcagccgc
tgctctgtctgcgaggtgccatctcaagctattgctgtacacagccaagacattaccatc
ccgcagtgccctggtggctggcgaagcctctggatagggtactctttccttatgcacacg
gctgctggcccagaaggtggaggccagtctctcgtgtcaccaggctcctgcctagaggac
ttccgtgccacacccttcattgagtgcaatggcgcgcgcggcacctgccactacttcgcc
aacaagtacagcttctggctgacgacggtggaggcaagccgacagtttgaggagtcgccg
ccctcagagacactgaaggcaggccaactgcgtacgcgggtcagccgctgccaagtctgc
attaagtacttgtag
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