Hemitrygon akajei (red stingray): 140734271
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Entry
140734271 CDS
T11019
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140734271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haka03019
]
140734271
Messenger RNA biogenesis [BR:
haka03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
140734271
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
140734271
NCBI-ProteinID:
XP_072914110
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Position
10:complement(31186717..31237719)
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AA seq
530 aa
AA seq
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MATDMEALGSAAESTAAPGSGSGLDDEEESWLYGDENPGKQEEVALVDGGEDSVKPLQET
SPEFKVSNLEMAEGVSQNGGDEDDSDSDSDDDDVKVTIGNIKTGAPQYMGTPMNLNLKSG
RTYGSSAAKLHSKGIDLEAPGSINGIPVIEVDLDSFEVKPWRKPGADLSDYFNYGFNEET
WKAYCEKQRRLQLGLDPVVASGSENKILFQQGRVCNVEKDVENNLPKVELKTDFTSPPGG
RMKAGPPPNSVSSRKLAGTIDVIGGYTGSIRRVEGRRRDKHGGDESTIQVLGDHGNKRPP
FPTPTGPPPPMPGPPPHFLHPPPPVTSGPPPMHPPGMPPPGSLPGLFPPPIVPPPALLLP
TVEGAPPPGYDTRPPPLFPYNPTESGLIGYPAVSTAQTPWINTLDKTTNSPWEYKGARRE
RDRERESDRDRNRERDRGPTPTTTEYNRERNYDREYHRSRDRSRDREERHRERRHKDKDD
SKHKSSRRKQHENEEGESHRRHKHKKNKRSKEDKEAADEGSTAPEAESKE
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgacatggaggcgctgggctcggccgcggagtctacggcagcaccgggcagt
ggcagtggcctggacgatgaggaggagagctggttgtacggagatgaaaatccgggtaaa
caagaagaggttgctttggttgatgggggtgaagactctgtaaaaccgctgcaggaaaca
tcacctgaattcaaagtcagcaacttagaaatggctgaaggtgtgtcacaaaatggtggt
gatgaggacgacagtgatagtgacagcgatgatgatgatgtgaaggtcaccattggcaac
attaaaacgggtgcaccacagtatatgggcacaccaatgaatttgaatctgaagagtgga
cgcacatatggttcttctgcagcaaagctgcattctaaaggcattgatcttgaggcccct
ggaagcatcaatggaattcctgtgattgaagtggatttggattcatttgaagttaaaccc
tggaggaaaccaggagctgacctttcagattattttaactatggcttcaatgaagaaaca
tggaaagcttattgtgagaaacagcgaagacttcagttaggacttgatcctgtcgttgca
tctggttcagagaacaaaatattgtttcagcaagggagagtgtgcaatgtggagaaggat
gtcgaaaacaacttgccaaaagtggaattgaagactgatttcacatctccacctggagga
aggatgaaagcaggcccaccacccaatagtgtttcctccagaaaacttgcgggcacgatt
gacgttattggtggatacacgggttccatcaggagagtagaaggaaggcgacgagacaag
catggaggagatgagagtacaattcaggttcttggagaccatggaaacaaaagaccacca
tttcccacgcctacaggccctcctcctccaatgcctggaccaccccctcatttcttgcac
ccacctcctcctgtcacaagtggaccgccacccatgcacccaccaggaatgccgccacct
gggtctctaccagggttatttccaccaccaattgtgccccctccagctttactgttgcca
actgtagaaggtgctccacctccaggctatgacaccaggccaccccctctatttccctat
aatcctacagaatctggactaattggttatccagcagtatccacagcccaaacaccctgg
attaatacacttgataaaacaaccaatagcccctgggagtacaaaggggcacgacgagaa
cgagaccgcgaacgagaatctgatcgagacagaaatcgtgaacgagatcgaggcccaacc
ccaacaacaactgaatataacagagaacggaactatgacagagagtatcatcggagcaga
gatcgcagtagagacagagaagaacgccacagggaacggaggcacaaagacaaagatgat
tccaagcacaagtcatcaaggcgcaaacagcacgagaacgaggagggagaaagtcacaga
cgtcacaaacacaagaagaataaacgaagcaaggaagacaaagaggctgcagatgaaggt
agtacagcacctgaggcggagtcaaaggaataa
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