Hemitrygon akajei (red stingray): 140734816
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Entry
140734816 CDS
T11019
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
haka Hemitrygon akajei (red stingray)
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
haka03016
]
140734816 (rtcb)
Enzymes [BR:
haka01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
140734816 (rtcb)
Transfer RNA biogenesis [BR:
haka03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
140734816 (rtcb)
Prokaryotic type
tRNA splicing ligases
140734816 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
140734816
NCBI-ProteinID:
XP_072915480
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All DBs
Position
10:150049260..150092148
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AA seq
505 aa
AA seq
DB search
MSRSYNDEIGYLDKIHKNCWRIKHGFVPNMQVEGVFYVNDTLEKLMFDELRNSCRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDDPTAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQAMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPSKVSAKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAARKMGIDHKGQICVMIHSGSRGFGHQVATDALVAMEKAMKRDNIIVNDRQLACARINS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEE
HVVDGKQKTLLIHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctacaacgatgagatcggttacctggataaaattcacaagaactgctgg
aggattaagcatggcttcgtacccaacatgcaggtggaaggggtattttatgtcaatgat
actctagagaaattgatgtttgatgagcttcgaaattcatgccgtgggggaggtgtcggt
ggctttctgccagcaatgaagcagattggaaatgtggcagcattacctggtattgttcat
agatccattgggcttcctgatgtccattcggggtatgggtttgcaattggaaacatggca
gcctttgatatggatgacccaacggctgtagtatccccaggtggtgtgggttttgatatc
aattgtggagtgcgattgttgcgaactaacctcgatgaaggagatgttcaaccagtgaag
gagcaactggctcaagccatgtttgatcatattcctgttggagttggatccaaaggagta
attccaatgggtgcaaaagatttggaagaggctttggaaatgggagtggactggtctctg
cgggaaggttatgcttgggctgaggataaggaacactgtgaagaatatgggaggatgctg
caagctgatccttccaaagtctcagcaaaggccaagaagaggggattaccccagctggga
acattgggtgctggaaatcactatgctgagattcaagtggtagatgaaatctacaatgac
tatgcagcacgcaaaatgggcattgatcataagggccagatttgtgttatgattcacagt
ggcagcagaggatttggacaccaggttgcaacagatgcactagtggctatggagaaagcg
atgaagagggataatattattgtcaatgacagacagctggcctgtgccaggattaattcc
caagaaggtcaggactaccttaaaggcatggcagcagctggaaactatgcttgggtgaat
cgctcatcgatgacctttctgacacgacaggcatttgccaaagttttcaacaccacaccg
gatgatctggatatgcatgtgatctatgatgtatcgcacaacatagccaaagtagaagag
catgtggtggatgggaaacagaagactttgctaatccataggaagggttctacaagagcc
ttcccacctcatcatcctcttataccagttgactatcagttaactgggcagcctgttttg
attggtggaacaatgggaacctgcagctatgtccttactggaacagaacaaggcatgaca
gaaacttttgggactacctgccatggggcggggcgagctttgtcacgtgcaaaatcccga
cgtaatcttgattttcaggatgtgttggacaaattagctgatatgggaattgctattcgt
gttgcttcacctaaactagtaatggaagaagctcccgaatcctacaagaatgtgactgat
gttgtcaatacttgtcatgatgcagggatcagcaaaaaagcaattaaactacggcctatt
gcagttataaaaggttga
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