Hemitrygon akajei (red stingray): 140736058
Help
Entry
140736058 CDS
T11019
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XIV) chain-like
KO
K08133
collagen type XIV alpha
Organism
haka Hemitrygon akajei (red stingray)
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
haka00535
]
140736058
Proteoglycans [BR:
haka00535
]
Extracellular matrix (ECM) proteoglycans
Others
140736058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
Pur_ac_phosph_N
VWA_2
Ig_DSCAM-DSCAML_C
VWA_3
FN3_Tor_3rd
Motif
Other DBs
NCBI-GeneID:
140736058
NCBI-ProteinID:
XP_072917882
LinkDB
All DBs
Position
11:complement(138722480..138905048)
Genome browser
AA seq
1868 aa
AA seq
DB search
MTAQKHCVLAFTIVVLHLISQAEGQGRLKLTVLSGDRLQMKWKEVDGNKQGYKIRVKPSS
GTSKREIILKTNIAKATVVGLSPTQEYTLQILLLNGTREHHYAKRKFIINVLKEQRSRKV
PKHKQSERMTSGTGENGTLLDLGIPTSNATGLNVTGRIHGTQSRKVKNSERRKSADKVSE
NKTRKLNITAAENERTSQMKNATQNLPKNKRKMVQEKRKEEPVSEEFLAKGSQFNCPSNA
AADIIIVIDGSWSIGRMNFRLVRQFLINLITPFRVGADGIRTGLTQYSGEPRTEWDLNAY
STKNEVLEAVQKIRYKGGNTYTALALKHVLENTLKASAGARPEAARFLILLTDGKSQDDV
ASSAQSLKDAGVEIFAIGVKNADEAELRQIASDPLELHVYNLPDFSLLDSLSDKLPKILC
GQMKAKATKVKSERHRPGSGAILYPTPTNLVISDITARSFRVSWTHSPKKANKYRVIYYP
TKGEKPEEVIVDGTVSSVVLENLHSLTEYQIAVFPIYENLVGEGLRGIETTLSFPSLNNL
TIYDVTHNSMRIKWQPQDEATHYMVLYEQVSTDEVEDGKEIRIDAQYTDIEIEDLSPNAE
YIVTAYALYGEETSEPVTAQQATHPLNPPRNLHLTELHHSSVKVNWERAARKVTGHQITY
VSANGNDPKQIEVGGNVTNVLLRNLTSLTKYVISVLSIYDTLRSVPITITAETVRVPPPS
DLRVTEFSDTSLTITWKHAASDVALYKIKWIPLSGGKLYELDIKGNVNTAVLQGLAKNTE
YQVSLSALYNDTAKSNAIVLRYNTYSRYPPTNLLIESKTPTSLQVSWDHSGGNVQQYKIS
YMTVTGGHADEMITHVKRNSIILQPLISDTTYNVTVTAVYASGDETSISGEGKTLPFVPP
ANLRITGVSYNHFRVIWDKAESQPMGYAVIYQAPSGKVMEVMTGEDEDSIVIKNLQSGQE
YNVRVFALYPNGNSTFIEGKAATLHLHVTGLRTYHIQLTTMCAQWQDHAGATGYKIVLES
LKDGKIQENSLHAGVDQYCFRHLFPNTPYKITVYTRLHDMAGPAVSVLQSTLPLPVRSTF
ASSAGPAALKDCRAVKADMTFIIDGSTMIGSVNFRKIIAFLYDTVTVFDKIGPDGIQVSV
SQFSNHMRNEIQHSSFESKEELLGAIYDIPYRGEDANTAKDDRKSNGLFSKNNTMERKHI
HKVVIMIARGAVLGEISETLQQLALKGFFIFILGIDDADEVKLNKIANVSGFKAVFYVHD
FSELNNIGNKVIASICQTVLTFCPLTNIQGTVVPGINMMEAFGLTDKEFSELEGVSMESD
IFSGLSSYSIFENAHLIRATRNIHPAGLPREHTITLLFRVLPNTPEEPFAIWQIVDEYFH
PLVGVVLDYKQQTLNYFNLDHKSELQRVTFSQPEVKRIFFGSFHKVHIAVSRTNVKLYLD
CVEIGEKLINGLGKISSEGFEVLAKLVNVSDPGSSSAPFQLQAFEMVCNNSFAEMDKCCD
LPALRDAVKCPPRAQPCTCSRVTKGSSGPSGLPGPPGARGPQGDRGEPGPRGPEGPIGDR
GPMGLQGEPGPPGPRGLSVRGPAGPPGEKGQKGEPGQRSNQGLPGPRGPPGRDGLQGPKG
ARGLEGTIGPPGLPGPRGPMGITGPSGYRGDQGPPGDVGPTGLPGAKGEKGEKGEPQSLA
AVYQMVSQACEELVQSHMLKFDLVLNEYTKNPVPVRIIQGPPGEVGEPGRPGHLEIEGLQ
ECQAYLAMMAKRATLERLASLVKRGRKEAQGSMHQALRGPKESQAHEVKVNVENKDHRDY
QAHQAVLACLVYLAPSDHQVLQDTVMSLPAIYFTQRVNQTLNLSINFNNCLKPFIVVEAT
LAFVLKDE
NT seq
5607 nt
NT seq
+upstream
nt +downstream
nt
atgactgcacaaaaacactgcgttctcgcctttacaatagtagtgcttcatctaatcagt
caagcggagggacaaggtagattgaaattaactgttctatcaggggacagactgcagatg
aaatggaaagaagttgatggaaacaaacaaggatacaaaatacgagttaaaccatcttca
ggtacctccaaacgggaaataatcctgaagacaaacatagcaaaagcaactgtagtaggc
ctttcacccactcaagagtacacacttcaaatattattgcttaacggaactcgtgagcac
cattacgccaaaagaaagtttattataaatgtcctaaaagaacagcgttcaaggaaagtt
cccaagcataagcaaagtgaaaggatgacaagtggaacaggagagaatggtactctgctg
gaccttggtattcccactagtaatgcaacaggcctcaatgtaacaggaaggatacatgga
acacaatccagaaaagtgaaaaattccgaacgaagaaagtcagcagataaggtgtcagag
aacaaaacaaggaagttgaatatcactgctgccgaaaatgaacgaacatcacaaatgaaa
aatgcaacacaaaatttgcctaaaaataaaaggaaaatggttcaagaaaagcgaaaggaa
gaacctgtgtctgaagaattcctagcaaaaggatctcaattcaattgcccatcaaatgct
gctgcagatattataattgtaattgatggatcatggagtattggtagaatgaacttccga
ctggtccgccagtttttgataaacttaattacaccttttcgtgttggtgcagatggaatt
agaactggattaactcaatatagtggagaaccaaggacagagtgggatctgaatgcatat
tctaccaagaatgaagttcttgaagcagttcaaaaaatacgctacaagggaggcaacacg
tatacagctcttgccttgaagcatgttttggaaaataccctaaaagcctctgctggagct
aggccagaagctgcaaggttcttgatactgcttaccgatgggaagtcacaggacgatgtt
gcctcatcagctcaaagcctgaaagatgctggcgttgaaatttttgctattggtgtaaag
aatgctgatgaagctgagctgagacaaatagcatctgatccacttgagctccatgtgtat
aatttgcctgacttcagtcttctagactctctcagtgataaacttccaaagattctttgt
ggacagatgaaggcaaaagcaaccaaagtgaaaagtgaacgtcacaggcctggcagtggt
gccattttgtatccaaccccaacaaatctggtgatatctgatataacagccaggagtttc
cgggtcagctggacccacagccccaagaaagctaacaaataccgtgttatatattaccct
accaaaggcgaaaaaccagaagaggtgattgtggatggaacagtttcatcagttgtccta
gagaatttacactcccttactgaatatcaaattgcagtgtttcccatctatgaaaattta
gttggtgaaggtctcagaggcattgaaacaacactgtctttcccgtccctgaataatctt
acaatctatgatgtcacacataacagtatgagaattaaatggcagcctcaagatgaagcc
actcattatatggtcctttatgaacaagtatctactgatgaagtagaagatggaaaagag
atcaggattgatgctcaatacacagatattgaaatagaagatctttctccaaatgcagag
tatattgtaacagcttatgctttatatggagaggaaacaagcgaaccagtaacagcacag
caagcaacacatccactgaaccctccaagaaacctacacctcactgagctccatcacagt
agtgtcaaagtaaattgggagagagctgcaaggaaagtgactggacatcagatcacatat
gtgtcagctaatgggaatgatcccaagcagattgaagttggtgggaacgttacaaatgta
ctattaagaaatctgacctcactgacaaagtatgtgatttctgtactttccatttatgat
accctgaggtctgtgcccattaccatcactgctgaaacagttagggttccacctccttca
gatctgagagtcactgaattttcagacaccagtttaacaattacatggaagcacgcagcc
agtgatgttgccctctacaaaataaaatggattccacttagtggaggaaaattgtatgag
ctggacatcaaagggaacgttaacacagcagtcttacaggggctggccaaaaacacggag
tatcaggtatcactgtcagcattatataatgacacagcaaagagcaacgccattgttctg
cgctacaatacatattccaggtatcctccaacaaatcttctcatagagtccaagactcca
actagcctccaagttagctgggatcattcaggcggaaatgttcaacagtacaaaatctca
tatatgacagttacaggtggccatgctgatgagatgataacacatgttaagagaaacagc
ataatattacaaccacttatatctgataccacgtacaatgtgacagttactgctgtctat
gcttcgggtgatgagaccagtatatccggagagggaaaaaccttgccatttgttccacca
gccaacctacgaatcactggggtgtcgtataatcacttccgtgtcatctgggataaagct
gagtcccaacctatgggatacgcagtgatttaccaggcaccttctggtaaagtcatggaa
gtaatgactggagaggatgaagactccattgtaataaagaaccttcagagtggacaggaa
tacaatgtcagagtgtttgcactgtatccaaatggcaacagtactttcattgaaggaaaa
gccgcaacattgcacttgcacgtaactggccttcgtacttatcacatccagttaacaacg
atgtgtgctcagtggcaagaccatgcaggagccacaggctacaagattgtccttgagtct
ctgaaagatggaaagatacaggaaaactccctgcatgcaggggtagaccagtactgtttc
agacatctatttcccaatactccctacaagatcactgtctacaccagactgcatgatatg
gcaggacctgctgtctctgttcttcagtctacattgccacttccagtaagatctacattt
gcttccagtgctggtcctgctgctcttaaagattgccgtgcggtcaaagcggacatgaca
tttataattgatggctccacaatgataggatcagtaaacttcaggaaaatcattgccttt
ctgtatgacactgttacagtttttgacaaaattggtcctgacggaattcaggtatcagtg
agccagttcagtaatcatatgaggaatgaaattcagcacagctcctttgaaagtaaggag
gaattgctgggagcaatctatgacataccttacagaggggaagatgccaacacagccaaa
gatgacagaaaatcaaatggtctgttttccaaaaataatacaatggaaagaaaacatatt
cataaagttgtgattatgattgctcgtggagcagttcttggagaaataagtgaaacactt
caacagctggcattgaaaggcttttttatctttattcttggcattgatgatgccgatgag
gtgaagcttaataaaattgcaaatgtgtctggtttcaaagctgtgttttatgtccatgac
ttcagtgaattaaacaacattggaaacaaagttattgcatccatttgtcaaactgttttg
acattttgtccactgacaaatattcaaggcacggttgtcccaggaattaacatgatggag
gcatttggcttaacagacaaagagttttcagaacttgagggagtttctatggaatctgac
atcttctcaggcttatcatcatatagtatttttgaaaatgctcatcttatacgagctacc
aggaatattcatcctgcaggtctacctagagagcataccattaccttgctgttccgagtg
ctaccgaatactcccgaagaaccgtttgcaatttggcagattgtggatgaatattttcac
cctcttgttggagttgtgcttgactataaacagcaaacactgaactatttcaaccttgac
cacaaaagtgaattacagagagttacttttagccaacctgaagtgaaaaggattttcttt
ggaagtttccacaaggtccatatagcagtgagtaggacaaatgtcaagctttatcttgac
tgtgtggagattggagagaaactcataaatggccttggaaaaatctcctcagaaggattt
gaagtgcttgcaaaactagtaaacgtcagtgatcctggtagtagttcagcgccatttcag
ttacaggcatttgaaatggtttgcaataattcttttgcggaaatggataagtgctgtgat
ctaccggcgttgagagatgctgtgaaatgtcccccccgtgctcagccctgcacttgctca
agggtaaccaaaggaagttcgggtccttcaggactaccaggtcctcctggtgcaagaggt
ccccagggtgatcgtggggagcctggacctcggggcccggaaggtccaattggtgataga
gggccaatgggattacaaggtgaaccgggacctccaggacccagggggcttagtgtacgc
ggacctgcgggtcctcctggtgaaaaggggcaaaaaggtgagcctggacaaagaagcaat
cagggtcttccaggtcctcggggtcctccagggagagatggacttcagggaccaaaggga
gcaagaggactggaaggcacaattggacctccaggacttcctgggccaagagggcccatg
ggtatcacagggccatctggctatcgaggggatcaaggtcctccaggtgatgttgggcca
actggactccctggtgcaaaaggagaaaaaggagagaagggagaacctcaatccctcgct
gcagtttatcagatggttagccaagcttgtgaagagcttgttcagagtcacatgttgaaa
tttgatttggtgttgaatgagtatacaaagaacccagtacccgtacggataatccaggga
ccaccaggtgaggttggagagccagggagacctggccacctggaaatcgagggcctccag
gaatgccaggcatacctggcaatgatggcaaagcgggctaccctggagagattggcaagc
ctggtgaaaagggggagaaaggaagcccaggggtcaatgcaccaggctctgaggggcccc
aaggaatcccaggcccacgaggtgaaggtaaacgtggaaaacaaggaccacagggattac
caggcccaccaggccgtcctggcctgcctggtttacctggctccatcggaccaccaggtg
ctgcaggacactgtgatgtctctgcctgcaatatatttcacacagagagtgaaccagaca
ttgaatctgagcataaatttcaacaactgccttaagccatttatagtggtggaagccact
cttgcattcgttctcaaggatgaatga
DBGET
integrated database retrieval system
