Hemitrygon akajei (red stingray): 140736272
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Entry
140736272 CDS
T11019
Name
(RefSeq) embryonic polyadenylate-binding protein-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03015
mRNA surveillance pathway
haka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140736272
09123 Folding, sorting and degradation
03018 RNA degradation
140736272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haka03019
]
140736272
03041 Spliceosome [BR:
haka03041
]
140736272
Messenger RNA biogenesis [BR:
haka03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
140736272
mRNA cycle factors
Stress granule specific factors
140736272
Spliceosome [BR:
haka03041
]
Complex C
Other components
Complex C specific factors
140736272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
140736272
NCBI-ProteinID:
XP_072918316
LinkDB
All DBs
Position
11:complement(168689889..168753461)
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AA seq
623 aa
AA seq
DB search
MNAAGPGYPIASLYIGDLHQDVTEAMLYEKFSPAGPVMSIRVCRDVVTRRSLGYAYINFQ
QPADAERALDTMNFEVIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDESIDNKALYDTFS
AFGNILSCKVVSDESGSKGYGFVHFETQEAANQAIETMNGMLLNDRKVFVGHFKSRKERA
AELGNKAHEYTNIYVKNFGEAMSSSRLREIFSIFGKTLSVRVMTDQYGHSKGFGFVNFEK
HEDARKAVAKMNGKEINSRPVYVGRAQKKAERQNELRRKFELMKQERSSRYLGVNLYVKN
LHDSIDDEHLRKEFAPYGTITSAKVMTEGGHSKGFGFVCFSLPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKVHLTNQYMQRLANVRTLPSPLLGSLLPSGYYMPSVPQVQNRTAYY
TASPIVRQSQRWATQPIRHPTPFHHIVPTARDTTARRVPTAISTVRQASTQVPVPSQNTQ
RVATTGTQTTGPRTVLSGPMVRVLPQYKYGSGVGSNQHPSSKPQVSQSTAAIHSQMPLTA
STLAAALPHEQKQILGERLYPLIHSMHPTLAGKITGMLLEIDNSELLHMFESRNSLHSKV
EEAVAVLQAHHAKEDAQRMGTLS
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcagccggaccaggataccccatcgcctctctgtacatcggggacctgcaccag
gacgtaacggaagctatgctgtatgagaagttctctcctgctggacccgtgatgtccatc
cgtgtgtgtcgggacgtggtcacccggcgctcgctgggctacgcctacatcaacttccag
cagccggctgacgctgaacgtgctctggacaccatgaattttgaggtcattaaggggcgc
cccatccgcatcatgtggtctcaacgcgatccgtccctgcgcaaatcgggagtgggaaac
atcttcatcaagaacctggatgaatccattgataacaaggcgttgtacgacacattctct
gcgtttgggaacattctatcctgcaaggtggtcagtgatgaaagtggatcgaaaggctac
ggttttgttcactttgagacgcaggaagctgccaaccaagcgatcgagacgatgaatggc
atgttgctcaatgaccgtaaagtgtttgtagggcacttcaagtcccgcaaggagagagcg
gcagagcttggtaacaaggctcacgagtacaccaacatctacgtcaagaactttggtgaa
gccatgagtagcagccggctgcgggaaatcttcagtatctttggaaaaacgctgagtgtc
cgagtgatgactgaccagtacggccactcgaagggatttgggtttgtcaacttcgagaag
cacgaagacgcgcgtaaggccgtggccaagatgaatggcaaggagattaacagtcggcct
gtgtatgtgggacgagcacagaagaaggcagaacgacagaacgagctacggcgtaaattc
gagctgatgaagcaggaacgtagcagtcgctacctgggggtgaacctgtatgtgaagaac
ctacatgatagcattgatgacgagcatttgaggaaggagttcgccccctacggaaccatt
accagtgcaaaggtgatgacggaaggaggccacagcaaaggtttcggttttgtctgtttc
tcattgcccgaggaggctaccaaggcagtgacggagatgaacgggcggatcgtcagcacc
aagcctctgtacgtggccctggcacagcgcaaggaggaacggaaggtgcacctcaccaac
cagtacatgcagcggctggccaacgtgagaacgctgcccagccctctgctgggctccctg
ctaccctctgggtactacatgccctctgtgccacaggttcagaaccgcaccgcgtattac
actgcctctcccatagtccgacagtcccagcgctgggcaactcagcctatcagacatccc
acccccttccaccacattgtgcccaccgcgagggacaccactgcccgcagggtccctacc
gccatcagcacagtccggcaggcgtccacccaggtcccagtgccctcccagaatacacag
cgtgtggcaaccactggaacacagacgaccggcccccgcaccgtcctttcggggcctatg
gtacgcgtcctgcctcagtacaaatatgggtcgggagtcggcagtaaccagcacccatcc
agcaaaccgcaggtgtcccagtccacggcggccatccacagtcagatgccgctgacagcc
tccaccttggctgcagcactaccgcacgaacagaagcagatattgggtgaacgcttgtat
ccactgatccacagcatgcacccaacactagctgggaaaattactggaatgttgctggag
atcgataactctgagctcctgcacatgttcgagtctcggaattctcttcactccaaggtg
gaggaagcagtggctgttctacaggctcaccacgctaaagaagacgcgcagagaatggga
acgttgagctga
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