Hemitrygon akajei (red stingray): 140736950
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Entry
140736950 CDS
T11019
Symbol
prpf38a
Name
(RefSeq) pre-mRNA-splicing factor 38A
KO
K12849
pre-mRNA-splicing factor 38A
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140736950 (prpf38a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
haka03041
]
140736950 (prpf38a)
Spliceosome [BR:
haka03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
140736950 (prpf38a)
Complex C
U4/U6.U5 tri-SnRNP related factors
140736950 (prpf38a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
140736950
NCBI-ProteinID:
XP_072919102
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All DBs
Position
12:complement(44007137..44023456)
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AA seq
311 aa
AA seq
DB search
MANRTVKDAHSIHGTNPQYLIEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKYIGGV
YGGNIKPSPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGALYMRLTGSAIDCYKYL
EPLYNDYRKVKRQRRDGEFELIHVDEFMDELLHEERVCDIILPRLQKRYVLEEAEMLDTR
VSALEEDMDDVDSSEDEDEDDKGDRMPTPEPPRRGYRDLDRPRRSPSPRYRRSRSKTPRR
RSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRHRSRSKSPGHHRSHRHRSHSKTPERSK
KSHRKSRRGNE
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccggacagtgaaagatgcgcacagcatccatgggaccaatccgcaatatctg
attgaaaaaatcattcgcacccgcatctatgagtccaagtattggaaggaggaatgtttc
gggcttacagcggaattggttgtggacaaagcgatggaattgaaatatattggcggtgtt
tatggtgggaatattaagccttccccgttcctttgcctgactctcaagatgctccagatt
cagcctgaaaaagatataattgttgaatttataaagaatgaagatttcaaatatgtccga
ttgctgggtgcactgtacatgcggctaacaggctctgctattgattgttataaatatctg
gaaccgctttataatgactatcggaaagtgaagagacaaagaagggatggagagtttgaa
ctaattcatgttgatgaatttatggacgagttactccatgaagaacgagtttgtgatatc
attttgcccaggcttcagaaacgttatgtgttggaagaagcagagatgctggatacacga
gtcagtgcactcgaggaagatatggatgatgtagactcaagtgaagatgaggatgaggat
gacaagggtgacagaatgccaacaccagagcctccacgaagaggttaccgagatcttgac
aggcctcgtaggtctccctctccgcggtacaggagaagccgaagcaaaacaccaaggcgg
cgcagtaggtctcccaaaagaagaagcccatcaccacgtcgtgaaaggcatcgcagcaaa
agtcctagacgtcatcgcagtcgatccagagatcggcgtcacagatcaagatccaagtct
ccaggtcatcacagaagccacagacacagaagtcattccaaaacacctgaaagatcgaag
aagagtcacaggaagagtcgccgaggaaatgaatga
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