Hemitrygon akajei (red stingray): 140737099
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Entry
140737099 CDS
T11019
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140737099 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haka03019
]
140737099 (smg7)
Messenger RNA biogenesis [BR:
haka03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
140737099 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
140737099 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
140737099
NCBI-ProteinID:
XP_072919376
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All DBs
Position
12:complement(62574496..62694865)
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AA seq
1178 aa
AA seq
DB search
MNTLCAQYLRQAEALKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQCSTGGIVKPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDDV
KTKWNVSDFIKAFIKFHGHVYLTKSLEKLCMLREKLEDQFKRLLPQKAFSSQQLVHLTVI
NLFELHHLRDFSTESDDHCYSQEELLCWTQLLGLFMSFLGVMCKCALQDENLKEALGECP
LPAVKVSLDWLKLRPNVFQESALEERQHIWPWIVSLLNSFHPQEDDLSSFNATPLPEEFE
LQGFLALRPSLRNLDFSSGHQGIVGDKEGQQLRTRHQRLLALGKWIAENHSRLIQSRNEE
GKLMFVTDIPELANEEPSEIKDSLILLESPFSEPTEISQGLKSVLSSGKTQSNSSENGEK
LVTFKENIKPREQNRNHHQKEGMKERWDFNKGNDITNKMDVKRDSNKRKTEPKKNNQDKN
LEHARKQNVAVQVKAQSELRKTPVSEARKTPVTQSPNQTSNSQFIPIHHPGAFPPLPSRP
GFPPPPYLVSPPVTFQMTPGYTFPPGVSIPGPFIQATGHPQSGNQVPGGKQSHVPYSQQR
PSGQGPINQGPQQQQQQSQQHQQVTPSQSQLQVQVVNQQSPTKAVQPLGKNQHHLGPQQY
LQADQTNQLWNQHHPVSSQHQKNSIQMSLKHQPYYMHQDPLKLFEKSLQQSQVQMEKNLK
SFAMEPFTQNPSDVQKLQDFAWDYDMRHMMGHQLNNDHMVKRHPGVFRTDQDNMTRMQSY
EDAKSSPLLPPDLLKSIADFEEEEELAFSKPHDFYQALAGPLGSSSGRGFFMPNRSRLER
PSELITSSSLLSLPPFPLNQENSQNNSIFSEVYGKNLAPSGKSENALPQAFHETSCYSLF
DGNPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNQNSFAGFGPIGTPDNSERRLT
DRWNMKRTDKSVMSGFGLDYLPAASSSSDITWHQVSTPSNTWAAPNTTLDESSTLLMDSF
KSIWSSSMMHPGPSALEQLLMQQKQKQQRGLGTLNPPH
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgctctgcgcgcagtatttacggcaagcagaggcccttaaggctgacatgaca
gattcaaagttgggtccggctgaagtctggacttccaggcaagcactgcaggacctctat
cagaagatgctggtcacagatttggaatatgcattagataagaaggtagagcaggacctc
tggaaccatgccttcaaaaatcagattacaacactacagggtcaggccaagaaccgagcc
aatcctaaccgcagtgaggtacaggccaacctttcgctcttcttagaggcagctagtggg
ttttacacacagctgttgcaagagttgtgcacagtgttcaatgtggacctcccttgccgt
gttaaatcttcacagcttggaatcatcagcaataaacaatgcagcaccggtggaattgtg
aaaccccaacccagctcttgctcatatatctgccagcactgccttgtacatcttggagac
atagctcgatacaggaatcagactagtcaggctgagtcatactacagacatgcagctcaa
cttgttccttcaaatggtcaaccatacaatcagctggcaattctggcttcctctaaaggt
gatcaccttactaccattttctactattgcagaagtattgctgtcaagtttccattccca
gctgcttctactaatctacaaaaagcgctttctaaagctttggaaagccgtgatgatgtg
aagactaagtggaatgtttctgacttcattaaggcttttattaaattccatggtcatgtg
tatttgactaaaagtttagagaagttgtgtatgctgagagagaagctggaagaccaattc
aagagacttcttcctcagaaggcatttagttctcagcaactcgtacacctcacagtcatt
aatctgtttgagttacaccatctgcgtgatttcagtactgaatctgacgaccattgctat
agtcaggaagaactactgtgttggacacaactcctgggtctcttcatgtcttttcttgga
gtaatgtgcaagtgtgcactgcaggatgagaacctcaaagaagccttgggtgaatgccct
ctgccagctgttaaagtttcattggattggctgaaactcagacccaatgtctttcaggag
agtgcattagaagaaaggcagcacatttggccctggattgtatcattgctgaacagtttt
catccacaggaggatgatttgtccagttttaatgctactcctcttcctgaagaatttgaa
ttgcagggatttcttgctctcagaccttcactaagaaatctggatttctcgagcgggcac
caaggaatagtgggtgacaaagaaggacagcaactaaggacacgccatcagcgattgctt
gctttgggaaagtggatagcagaaaatcattccaggcttatccagagcagaaatgaagaa
ggtaaactaatgttcgtaactgacatcccagaactggctaatgaagagccttctgaaata
aaggatagtctgattttgctggaatctccattttcagaaccaactgagattagtcaaggt
ttaaagtctgttttgtcatcaggcaagactcagagtaacagttcagaaaatggagaaaaa
ctggttaccttcaaggagaatatcaaaccacgagaacagaaccggaatcatcatcagaaa
gaaggcatgaaggaaagatgggactttaacaaaggaaatgacattacaaataaaatggat
gtaaaaagagatagcaataaaagaaagactgaaccaaagaaaaataatcaggacaagaac
ctggagcatgctcggaaacagaatgtggcggtgcaggtaaaagctcagtctgaattacga
aagacacccgtatcagaggcaaggaagacaccagtgacgcagtcaccaaaccaaaccagc
aattcacagttcatccccattcaccatccaggagcatttcctcctcttcctagccggcca
gggtttcctccacctccttatctggtgtcgccaccagttactttccaaatgactcctggc
tatacatttccacctggagtctccataccaggacctttcatccaagccactggccaccca
cagtcaggaaaccaggtaccaggcggaaagcaatcccatgtcccctatagccagcagcgc
ccttcaggacaagggccaataaaccaaggaccccagcaacagcagcagcaatctcagcaa
catcagcaggtcactccatcccagtcacagcttcaggttcaggttgtgaaccagcagtcg
cccaccaaggcagtgcagccattgggaaagaatcaacaccatctcggacctcagcagtat
ctgcaggctgatcagaccaaccagctttggaatcagcatcatccagtctcctctcagcat
cagaagaattctatacagatgtctctgaaacatcagccctattacatgcatcaggaccct
ctgaagctatttgaaaagtcacttcaacaatcacaagtccagatggaaaagaatctgaag
agttttgctatggagccttttacccagaatccttccgatgtgcaaaaattgcaggacttt
gcatgggactatgacatgcgacatatgatgggacatcagctgaataatgatcatatggtg
aaacggcatccaggggttttccgaacagaccaagataatatgactagaatgcagtcatat
gaggatgccaagagctcacctctgttgcctcctgatttgttaaaaagtattgctgacttt
gaggaggaggaagagctggctttttccaaaccccatgatttctaccaggccttggctggc
cctcttggcagttcttcggggcgtggtttctttatgccaaatcgatctcgactggagagg
ccttctgagctgattacctcttcatccttattgtccttgccaccttttccacttaatcag
gaaaactctcagaataacagcattttcagtgaggtttatggcaagaatctagcaccaagt
ggcaaatcagagaatgcgctaccacaagcattccatgagacctcctgttattcattattt
gatggaaacccttggtccccatctcttcctgccagctcagaccactcaacaccagcaagc
cagtctcctcactcctctaatcccagcagtttgccaagttctccaccaactcacaaccaa
aactcatttgctggctttggacctattggaactcctgacaacagtgagaggaggctgact
gatcggtggaacatgaaacgtacagataaatcagtaatgagtggatttggcctggactat
ctacctgctgcatcttcctcttcagacatcacttggcatcaggtcagtactcccagcaac
acctgggctgccccaaacaccacactggatgagtcatccacactgctcatggacagtttc
aagtcaatctggtctagttcaatgatgcatcctggaccttctgcactggagcagttgcta
atgcagcagaaacagaagcaacagcgaggactcggcacactgaacccaccacactga
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integrated database retrieval system
