Hemitrygon akajei (red stingray): 140737326
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Entry
140737326 CDS
T11019
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03022
Basal transcription factors
haka03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
140737326 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
140737326 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haka03021
]
140737326 (ercc2)
03036 Chromosome and associated proteins [BR:
haka03036
]
140737326 (ercc2)
03400 DNA repair and recombination proteins [BR:
haka03400
]
140737326 (ercc2)
Enzymes [BR:
haka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
140737326 (ercc2)
Transcription machinery [BR:
haka03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
140737326 (ercc2)
Chromosome and associated proteins [BR:
haka03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
140737326 (ercc2)
DNA repair and recombination proteins [BR:
haka03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
140737326 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
SesA
SNF2-rel_dom
AAA_11
Motif
Other DBs
NCBI-GeneID:
140737326
NCBI-ProteinID:
XP_072919859
LinkDB
All DBs
Position
12:complement(99934410..100022893)
Genome browser
AA seq
760 aa
AA seq
DB search
MRLNIDGLLVYFPYDYIYPEQYSYMLELKRILDAKGHGVLEMPSGTGKTISLLSLIVAYQ
MTYPAEVTKLIYCSRTVPEIEKVIEELRKLLEYYEKQTGEKKQFLALALSSRKNLCIHPE
VSAQRFGKEVDGKCHSLTASHVRVQHSSNPSVPICRFYEEFDDHGRQEPLSSGVYNLDDL
KVYGRQKGWCPYFLARYSILHANIIVYSYHYLLDPKIADLVSKELSRKSVVVFDEAHNID
NVCIDSMSVNISRRTLDQCQNNIETLQRTIQHLKETDAAKLKEEYRQLVEGLKEAHVARE
TDVYLANPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKSRLRVHHVVAENPSSFLKD
IFDKVCIERKPLRFCAERLRSLLRTLEIADLTDFSAITLVSNFATLVSTYTKGFTIIMEP
FDDRTPTVINPVLHFSCMDPSIAIKPVFERFQSVIITSGTLSPLDMYPKILDFRPVILAT
FTMTLARTCLCPMIVGRGNDQVTISSKFETREDIAVIRNYGNLLLEMSAIVPDGIVSFFT
SYHYMENIVASWYEQGILENIQRNKLIFIETQDAAETSVALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYTRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHITDGNLNLTVDESVQIAKHF
LRQMAQPFRQEDQLGLSLLSIEQLESEEIINRIQEIAHQV
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgaacattgatgggttgttggtgtacttcccctatgattacatctaccctgag
caatactcctacatgctggagctgaagagaatcctcgatgccaagggtcatggtgttttg
gaaatgccgtcgggtacagggaagaccatatcactgctttcactgattgtagcttatcag
atgacgtatcctgctgaagtgacaaagctgatctattgttcacggacagttcctgagatc
gaaaaggttattgaggaactccgcaagttgctagagtattatgagaaacaaactggtgaa
aaaaaacagtttctggcactggcgctcagctccaggaagaatctctgcatccatccagag
gtcagtgcccagcgttttgggaaggaagtggacgggaagtgtcacagtctgactgcatca
cacgtcagggtgcagcactccagcaaccccagtgtgcccatctgccgtttctacgaggag
tttgacgatcacgggagacaagagcccctttcctctggcgtttataatctagatgacctg
aaggtttatgggcgacagaagggctggtgcccctatttcctggctcgatattccatcctg
catgcaaacataattgtctacagctaccactacctgctggatcccaagatcgcagacctg
gtttccaaggagctgtcacggaaatcggtagtggtgttcgatgaagctcacaacattgat
aacgtgtgcatcgattcaatgagtgtcaatatttcccgccgcactttggatcaatgtcag
aacaacattgaaacgctacaaaggaccattcagcacttaaaggaaacagatgctgccaag
ctgaaggaggaataccggcaattggtggagggtctgaaggaagctcatgttgccagggaa
acggatgtctatttagccaatccagtattaccagacgaaatactacaagaggctgtccca
ggtagtatccgcactgccgagcattttgttgggtttatgaagcggtttttggagtatcta
aagtctcgcctgagggtacaccacgtagtggcagagaatccttcctcattcttgaaggac
atctttgacaaggtctgcattgaaaggaaacccctcaggttctgtgctgagcgattacga
tcactactacggacattggaaattgcagacctcactgacttttcagccatcacgcttgtc
tctaactttgctacattggtcagcacctacaccaaaggttttaccatcattatggaaccc
tttgatgacagaactccaaccgttattaatccagtccttcacttcagctgcatggaccca
tccatcgccataaagccagtctttgaacggtttcagtcagtgattattacctcagggacc
ttgtcccctctggatatgtatccaaaaatcctcgatttccggccggtcattctggcaaca
tttacgatgaccttagcaaggacctgcctgtgccccatgattgtaggtcgaggcaatgat
caggtgacaataagctcaaaatttgaaaccagggaagatattgctgtgatccgtaactat
ggtaacctcctgctggagatgtccgctattgtcccagatggaattgtgtcattcttcacc
agttatcactacatggagaacattgtggcttcctggtatgagcagggcattctagaaaac
attcaacgaaataaacttattttcatcgaaacgcaagatgctgctgagaccagcgtagct
ctggagaaataccaggaggcatgtgagaatgggcgaggggccattctgctgtctgtcgca
agagggaaagtctccgagggaatagattttgttcatcactatgggagagctgtcattatg
tttggtgttccctacgtctacactcagagcaggattctgaaggctcggctggaatataca
cgggaccagttccaaattcgcgagaacgatttcctgaccttcgatgctatgagacatgca
gctcagtgcgtgggacgagccattcgagggaaaactgattatggattaatgatttttgca
gacaagcgttacgctcgggctgataaaagggggaagttacctcgctggatccaggaacac
atcactgacggtaacctgaacctgacggtggatgagtccgtgcagatagccaagcatttt
ctgcgtcagatggcacagcctttccgacaggaggatcagctgggattgtcgctgctctca
attgaacaactggaatctgaggagataatcaataggatacaagagatcgcccatcaagtg
tga
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integrated database retrieval system
