Hemitrygon akajei (red stingray): 140737795
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Entry
140737795 CDS
T11019
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140737795 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haka03019
]
140737795 (mtrex)
03041 Spliceosome [BR:
haka03041
]
140737795 (mtrex)
03009 Ribosome biogenesis [BR:
haka03009
]
140737795 (mtrex)
03016 Transfer RNA biogenesis [BR:
haka03016
]
140737795 (mtrex)
Enzymes [BR:
haka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140737795 (mtrex)
Messenger RNA biogenesis [BR:
haka03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
140737795 (mtrex)
Spliceosome [BR:
haka03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
140737795 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
140737795 (mtrex)
Ribosome biogenesis [BR:
haka03009
]
Eukaryotic type
Pre-60S particles
Helicases
140737795 (mtrex)
Transfer RNA biogenesis [BR:
haka03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
140737795 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
140737795
NCBI-ProteinID:
XP_072920538
LinkDB
All DBs
Position
13:39681292..39788874
Genome browser
AA seq
1029 aa
AA seq
DB search
MADTFGDDLFSVFEEDSSKKAKGGDGGGGNAGKGSDGTLRDASTNTVKNKRELDTDNPDD
AIFGKKPKIEAISTDEINLADLMPKVKVEQVETVEGCTHEVAIPMYDEYQQLKPRVGKAA
KEYPFILDAFQREAIACIDNNQSVLVSAHTSAGKTVCAEYAIALALRDKQRVIFTSPIKA
LSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDE
IHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRP
TPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKVDSKGRKGGTKGPSN
VFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDDEKKLVEEVFNNAIDCLSD
EDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINMPA
RTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVILMVDEKMSPTVGKQLLK
GSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQNYKAIPGVVEKVKVLEGQYN
EIEIPNEENVVAYYKIRQQLAKLGKEIEEYLHKPKYCLPFLQPGRLVKVKNEDDDFGWGV
VINFNKKSNVKPNTGELDPLYVVEALLHCSKDSVKLAASEAAKPAKAGEKGEMQVVPILL
HLISAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPVDDMGIKDQGLKKV
IQKIEAFEHRMYSHSMHNDSNLETVYGLCERKAQIAADIKAAKRELKKARTVLQMDELKC
RKRVIRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGIFNDLTAEQATALLSCFV
FQEKANEMPKLTEQLAGPLRQMQECARRIAKVSAEAKLEVDEEMYLDSFRPHLMDVVFTW
ANGSTFAQICKMTEVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGISKIKRD
IVFAASLYL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcggatacgtttggtgatgatctgttcagcgtgttcgaggaagattcgtcgaaaaaa
gccaaaggaggggatggtggtggagggaacgcagggaaaggcagtgatgggactcttcga
gatgcaagtacaaatacagtgaagaataagcgtgagctcgatacagataatccagatgat
gcaatatttgggaagaagcctaaaattgaagccatttccacagatgaaattaaccttgca
gacttgatgcccaaggtgaaagtggaacaagttgaaacagtagagggatgtactcatgag
gtggctattccaatgtacgatgaatatcaacaactaaaacctcgtgttggaaaagcagca
aaggaatacccttttatcctggatgcttttcaaagagaagccattgcttgtattgacaac
aaccaatctgtattggtgtctgcacatacatctgctggcaaaacagtttgtgctgagtat
gcaatagctcttgctttacgtgataagcaaagagttatctttaccagtcctatcaaggca
ttgagcaatcagaagtatcgtgaaatgtatgaggaattccaggatgtgggattaatgact
ggtgatgtcacgatcaatccaacagcctcttgcttagttatgacaactgagattttaagg
agtatgctgtatcgaggatcagaggttatgagagaagtagcctgggtaatcttcgatgaa
atccattatatgagagatgccgaacgaggtgttgtatgggaggaaacaattatacttctc
ccggacaacgttcattacgtgttcctttctgcaactattcccaatgcacgccagtttgct
gagtggatttgccatcttcacaaacagccttgtcatgtgatctacacagactacagacca
acacctctacaacactatatttttccagcgggtggtgatggattgcacttagttgttgat
gaaaatggggattttcgagaagataacttcaacacagctatgcaggtactgagagatgct
ggtgatcttgcgaaagttgattcaaaggggcggaaaggaggaactaaagggccatcaaat
gtattcaagattgtaaagatgatcatggaaaggaattttcagcctgttatcatctttagc
ttcagcaagaaggactgtgaagcatatgctctacagatgaccaaacttgatttcaatact
gatgatgagaaaaagctggttgaagaggtatttaacaatgctattgactgcttgtctgat
gaagataaaaaacttccacaggttgaacatgttttgcctcttttaaaaaggggaatcgga
attcaccatggaggattacttccgatactgaaagaaaccattgagattcttttctctgaa
ggacttctgaaggcattgtttgctacagagacctttgctatgggtatcaacatgccagca
aggacagttctgtttacaagtgcacgcaaatttgatgggaaagatttccgctggatttct
tcaggagaatatattcagatgtctggtcgagctggtagacgtggcatggacgaaagaggg
attgttattctcatggtggatgaaaagatgagtccaacagtaggaaaacagcttttaaag
ggctcagctgatcctctaaacagtgcttttcatctgacctacaacatggttttgaatttg
cttcgtgttgaagaaatcaatcctgaatatatgttggaaaagtccttctaccagttccag
aactacaaggcaatccctggggtggtggaaaaggtcaaggtactggaagggcagtataat
gaaattgaaattcccaacgaagaaaatgttgtcgcttactacaaaatacgacagcagctg
gctaaactgggtaaagaaattgaagagtatttacacaaaccaaagtactgcttacctttc
ctccagccaggcaggcttgttaaggtgaaaaatgaagatgatgactttggttggggagtt
gtcataaatttcaataaaaagtctaacgttaagcctaatactggggagctcgatcctttg
tatgtggtagaagctttactgcactgcagcaaggacagcgtgaagctcgcagcttccgaa
gcagctaagccagcaaaagcaggagaaaaaggagagatgcaagttgttcctatcttgctt
cacttaataagtgcaatcagtagtgtacgcctatatattccaaaagacctgaggccactg
gacaacaggcaaagtgttttgaaatcaatacaggaagtacagaagagatttcctgatggt
gtacctttattggatccagtcgatgatatgggaatcaaggatcagggactgaaaaaagta
atccagaaaattgaggcttttgaacacagaatgtattcacattccatgcacaatgactca
aatttggaaactgtctatggactttgtgaaaggaaagcacagattgcagcagatatcaaa
gcagcaaaacgagaattgaagaaagctcgaacggttttgcagatggatgaattgaaatgc
cgtaaacgtgtgatcagacgattaggttttgctacttcgtccgacgtcattgaaatgaaa
ggacgagttgcttgtgaaataagcagtgcagatgagcttcttctgactgaaatgatgttt
aatggcatctttaatgatttgactgctgagcaggcaacagctttacttagctgttttgtg
tttcaggagaaggcaaatgaaatgcctaaactgacagaacaacttgcaggtcctttacgc
cagatgcaggaatgtgccaggagaattgccaaagtgtcagcagaagccaaactggaggtt
gatgaagaaatgtatctggactccttccgtccccatttaatggatgttgtatttacatgg
gcaaatggatctacttttgctcaaatatgcaaaatgacagaggtctttgaaggaagtata
attcgttgcatgaggcgactggaagaactccttcgacagatgtgccaagcagcaaaggcc
attggaaacacagagctagaaaacaaatttgcagaaggcatatccaagatcaaaagagat
attgtatttgcagcaagtctttacttataa
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