Hemitrygon akajei (red stingray): 140737954
Help
Entry
140737954 CDS
T11019
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03030
DNA replication
haka03410
Base excision repair
haka03420
Nucleotide excision repair
haka03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
140737954 (rfc1)
03410 Base excision repair
140737954 (rfc1)
03420 Nucleotide excision repair
140737954 (rfc1)
03430 Mismatch repair
140737954 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haka03032
]
140737954 (rfc1)
03400 DNA repair and recombination proteins [BR:
haka03400
]
140737954 (rfc1)
DNA replication proteins [BR:
haka03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
140737954 (rfc1)
DNA repair and recombination proteins [BR:
haka03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
140737954 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
PTCB-BRCT
AAA_30
AAA_22
Rad17
AAA_7
AAA_14
BRCT_2
AAA_16
RuvB_N
AAA_5
AAA_17
nSTAND3
Zeta_toxin
AAA_33
TIP49
RNA_helicase
AAA_18
AAA_19
NTPase_1
Motif
Other DBs
NCBI-GeneID:
140737954
NCBI-ProteinID:
XP_072920928
LinkDB
All DBs
Position
13:64670040..64778886
Genome browser
AA seq
1188 aa
AA seq
DB search
MKLRRNGDMDIRRFFDVLPTAKKAGNEALEKNKMKNVGKESLNMKKTDVKRKDPFNSKAS
KQKPVHRKKHIIYDSDSEPEASPPDKKLKKGSSSSKPTKSSKSEPVTVVSETDEEDDFLQ
SRKMIQKSRENGGHPGTSGSGRTTNVKSQLKPVQPKPASPVKFTAISVQDYFGSNSVQRS
SKKLVASKRKAPPASLDSTVDDEELARQLQLDEDAEMERQLHEDEEFAKTLAMLDELPKS
KKARADPESQELSLSLVVKAEPRKSADEQTAEHSAKMLSDVDNVKNCSEKFSKSQNTRIS
THLSSESSSNVEKSLHKVSPSKISAKLANMKRNEELVRVKGDSPTKPVREKRTSPRKEKT
LFSKKEAKISPKKEEKANSLKNGGKRISPKKEEQTVSPQTKEKASPSKSESPEDSEKKRH
NYLAYRSFLNRDGPRALGSKEIPQGAENCLEGLTFVITGVLESMEREDAKSLIERHGGKL
TGNVSKKTSYLVTGREGGQSKLDKAESFGTKQIDEDGLLDLIRRMPGKKSKYEIAAEEEV
RKSKSKVQEAAKMANKGEHVKNSSPPLKRQTEHKKSGSSAENGESSQCKKSTLLGTEAST
NSSAPICDRWNPASEKEVQSLLWVDKYKPAMLKNLIGQQGEQSCANKLVRWLKQWHVNNA
GNSKPAVKFNKFGGKDDGSSFKAALLSGPPGVGKTTTATLVCKELGYNYVELNASDTRSK
NTLKEVIAESLNNTSIKGFCSGTASLGPKHLLIMDEVDGMAGNEDRGGIQELISLIKQTK
IPIICMCNDRNHPKIRSLANYCFDLRFQRPRVEQIKGAMMTVAFKEGLKIPPPAMNEIIL
AASQDIRQILHNLSMWCVENKTLTYDQAKDNGKKTKKDIKLGPFDVVRKVFSAGEETASM
SLIDKSDLFFHDYSLSPLFVQENYLHVKPAASGSNLKKHLMLLSKTADSICDGDHVDKQI
RSRQAWNLLPTQAIYASVIPGELMRGYMSQFPTFPSWLGKFSSTGKHERIVQELTRHMCL
RTHASKRAVNLDYLPFLRDALVRPLSLQGANGVQEAVETMDAYYLLKEDVDCIMEINSWG
GRPDPFSKLDPKVKAAFTRTYNKETHLTPYALQAIKKLKYGSGAGSSLDSELNEDLQTED
VQADEAEDNLEMDGMIKPKKSKASKSRTEEKLPQPKGRKDKGKQRATK
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcggaggaacggtgacatggacatcagaagattttttgacgtgcttcctaca
gcaaagaaggctgggaatgaggctttggaaaagaacaaaatgaaaaatgttggcaaagag
tcgttaaacatgaagaaaactgatgtcaagagaaaggaccccttcaattcaaaagcatca
aaacaaaaaccagtgcacaggaaaaaacacattatttatgattcggattctgaaccagaa
gcttcacctccagataagaaactcaagaaagggtcgtcatcctctaaacctacaaaatcc
tccaaatcagagcctgtaactgtggtttctgaaacggatgaagaggatgattttctgcaa
agtaggaagatgatccaaaaatccagggaaaatggtggtcatccagggacatcaggatct
ggaaggaccaccaatgtgaaatcacagctcaagccagtgcagcccaaaccagcaagtcca
gtgaaattcaccgctatatcagttcaagattacttcggctcaaacagtgtgcaaagatcc
agtaaaaaactggtggccagcaaaaggaaagcacctccagccagtcttgattctactgtg
gatgacgaagagttagctcgccagttacaacttgatgaagatgcagagatggaacggcag
ctgcatgaggatgaagaatttgctaaaacattggcaatgttggatgagctgccaaaaagc
aaaaaggcacgggcagatcctgaaagccaggagttatcgttatctttggtagtaaaagct
gaacctagaaaatcggcagatgagcagacagcagaacactcagccaagatgttgagtgat
gttgataatgtgaagaactgcagtgaaaagttcagtaaatcacagaacacaaggatttct
actcacctgtcatctgaatcttctagtaatgtagaaaaatcacttcataaagtatctcca
tctaaaataagtgcaaaattggccaacatgaaacgtaatgaagaattggtgcgagtaaaa
ggggacagtccaacaaagccagtccgagagaagagaacttcaccgaggaaagagaaaacc
cttttttcaaagaaagaagcaaagatttctcccaaaaaagaggaaaaagctaattcttta
aagaatggaggtaaaaggatttctccaaagaaggaagaacagactgtttcaccacagaca
aaggagaaagcatccccaagcaagtctgagagccctgaggattctgaaaagaagcgccac
aattatttggcttatcgtagctttctaaatcgtgatgggccacgagctttgggttcaaaa
gaaatccctcagggagctgagaactgcttggaagggcttacattcgtcattacaggagtc
cttgaatccatggagcgcgaagatgctaaatctttaatcgagcgtcacggaggaaaacta
actggaaatgtcagtaagaaaacaagttacctggtgactggtcgagaaggcgggcagtca
aaactggacaaagcagagagttttggaacaaagcaaatcgatgaagatggactgttggat
ctgattcgtagaatgccaggaaagaagtccaaatatgagattgctgctgaagaggaggtt
agaaagtcaaaatccaaagtgcaagaagctgccaagatggcaaacaaaggtgagcatgtt
aagaacagctcaccaccattgaagagacaaacagagcataaaaagagtggttcttcagca
gagaatggagaatcctcacaatgtaagaagagtacgttactaggaacagaagcttccacc
aatagttctgccccgatatgtgatcgttggaacccagcttcagagaaggaggtgcagagt
ttgctgtgggtggataagtataagcctgcaatgctgaagaatttaatcggacaacaagga
gagcagagttgtgcaaataaactggtccgttggctgaaacaatggcatgtgaacaatgct
gggaacagcaaacctgcagtgaaattcaacaaatttggtgggaaggacgatggttcaagc
ttcaaggctgctctgctgtctggtcctccgggtgtaggtaaaacaaccacagctactcta
gtatgtaaggaactgggatacaactatgttgaactcaatgccagtgacactcgcagcaag
aacacgttgaaagaagtgatagcagaatcattgaacaacaccagcatcaaaggcttctgt
tctggaactgcatcgttaggtcccaaacacttgttaatcatggatgaggtggatgggatg
gctggtaatgaggacaggggtggaatacaggagctgatttctctcataaagcagaccaag
attcccataatctgtatgtgtaatgatcggaaccatcccaagatacggtctttagcaaat
tactgttttgatctccgtttccagcggcctcgagtagaacaaattaagggtgcaatgatg
actgttgcttttaaagaaggcttgaagattcctcctccagctatgaatgaaattatactt
gcagccagtcaagatatcagacagatcctgcacaatctcagtatgtggtgtgtagaaaac
aagactctgacatacgatcaggctaaagacaatggcaagaagacaaagaaagacattaaa
ctgggtccctttgatgttgtgaggaaagtgttttctgctggagaggaaactgcctccatg
agcttgattgacaagtcagatctcttcttccatgattactctctctcaccactttttgtt
caagaaaactacctgcatgtgaagccagcagcctctggatcaaacctcaagaagcattta
atgctgttgagtaagacagcagatagtatctgtgacggagaccatgttgataaacagatc
agatctcggcaggcgtggaatctactccctactcaggcaatatatgcaagtgtgattcct
ggtgaattgatgagaggttacatgtcacaatttccaactttcccaagttggttggggaaa
ttttcgtccactggcaagcatgaacgtattgtccaggaacttaccaggcatatgtgccta
aggacacatgccagcaagcgggcagtaaacttggattaccttccttttctgcgggatgcc
ctggtgcgacccctttcacttcagggagcgaatggtgttcaggaggctgttgaaaccatg
gatgcatattatctgctgaaggaggatgtggattgtatcatggagattaatagctggggt
ggtcggcctgatccattctccaaattagacccgaaggtaaaagctgcatttactcgcacc
tataacaaagagacacatttgactccatatgctctgcaagccataaagaaactgaaatat
gggagtggtgctggatcgtctctggactctgagcttaatgaggacttgcagacagaggat
gtacaagcagatgaagctgaggataacttggaaatggatggaatgattaagccaaagaag
tctaaagcatcaaagagcagaacagaagaaaaattgccacagccgaaaggaagaaaggat
aaggggaagcaaagagcaacaaaatga
DBGET
integrated database retrieval system
