Hemitrygon akajei (red stingray): 140739119
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Entry
140739119 CDS
T11019
Symbol
pcdh12
Name
(RefSeq) protocadherin-18
KO
K16499
protocadherin delta 2
Organism
haka Hemitrygon akajei (red stingray)
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
haka04515
]
140739119 (pcdh12)
Cell adhesion molecules [BR:
haka04515
]
Cadherins
Protocadherins
140739119 (pcdh12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
DUF6479
Cadherin_4
Syndecan
Motif
Other DBs
NCBI-GeneID:
140739119
NCBI-ProteinID:
XP_072923189
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Position
15:4778842..4816235
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AA seq
748 aa
AA seq
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MGQAALLLLCCIVTTARPQDVPAEGVASRPEEFAPLSGQWEPEPGEEEEGAGRCRLYPTA
PELPDDAETSPSPSTTRELLLHIPEGLPEGATVAVVEAPGMGVECRLEAGPDGGSFGLQW
VSGGRFTLVTRTALDREQQAEYNLTLITESGPWSGRPASLTIRLTDKNDNPPVFDQSAYR
ALVIENDPSNRTILTVAASDRDSGANGRVTYSIVSPAVPWPLAVHPTTGAVYSVAPLDHE
RAQRLDLVVEARDGGHPPARATVPVRLDVGDLNDNSPMFTAPVERRLTVAGVGGGCADGA
PPGGRGLLLPVTVLKAEDADSGRNGELVYELAAEEGDGSGVFQLNSGGELRANVCGVSHL
LEREWRATVRVRDRGTPSRSASTVLTISFVAAATSASLGRPVLTGIALGAVCGTILPVLL
VWWAVCGRRRRRRDGGAYNCRRAETDYRQQPRRPERRIQKTDITLLQRSRTEPTESQPDV
PCPVPRGEPDSRHRQLLRELVRLSRVSCPDGYLDLAAGSPHVQQISQLLSLLHQGKFQAR
PNFRGNKYLRNYRGATPEADRGSLKDSGQGESEEGDSDSDGGRTSPIDQLLEDGLSELLA
GGSWTSPTGLTVGESGAERLSLEDLCWTLPSTLPSSDYKENVFSPESMEAGGAVDGEKAM
FSTFGKGGPEHDSGAGSGSDSLLTEMGALFQQLLSQKAEVYRQPGPDLLRRLSARWSVLC
EGEMSSGRCRGSRLPGLPESPAQGPGSE
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgggacaggcggctctccttctgctgtgctgtattgtaaccactgcccgtcctcaggat
gtgccggcggagggagtcgcttctcgccctgaagaattcgccccactgtccggacagtgg
gaaccagagcccggggaggaggaggagggagccggtcgctgccgcttgtaccctacagca
ccggagctcccggacgatgcggagacctctccgtcgccatcgaccactcgggaactgctg
ctacacataccggaggggctgcctgagggagcgaccgtggccgtggtggaagcaccgggg
atgggcgtggagtgccggctggaggcaggaccggacggcggcagcttcgggctgcagtgg
gtatcgggaggcagattcactttggtgacccgtaccgctctggaccgggaacagcaggcc
gagtacaacctgacgctgattaccgagagcggcccctggagcgggcgccccgccagcctc
accattcggctgacggacaagaacgacaacccgccggttttcgaccagagcgcttaccgg
gcgctggtgatagagaacgatccctccaaccgcaccatcctgacggtggcggcgtcggac
cgggactcgggcgccaacgggcgagtcacttactccatcgtgagcccggcggtgccgtgg
ccgctcgccgtgcacccgaccaccggcgccgtctactcggtggcgccgctcgaccacgag
cgcgcgcagcgcctggacctggtggtggaggcgcgcgacggcggccacccgcccgcgcgc
gccaccgtgcccgtgcgcctggatgtgggcgaccttaacgacaacagcccgatgttcacg
gcgccggtggagcgtcggctgacggtggcgggagtaggcggcgggtgcgctgacggggcg
ccgccgggaggacggggactgctgctgccggtcacggtgctgaaagcggaggacgccgat
tccggtcgcaacggggagctggtgtacgagttggcggcggaagaaggcgacgggagcggc
gtcttccagttgaacagcggcggggagctgcgagccaacgtgtgcggtgtcagccacctg
ctggaacgggagtggcgggcgaccgtgcgggtccgtgaccggggcacccccagtcgttcg
gccagcactgtcctgactatctcgttcgtggcggcggcgaccagcgcgagtcttggccgg
ccggtgttgaccggcatcgccctgggcgccgtttgcgggacaatactgccggtgctgctg
gtgtggtgggcggtttgcggtaggcggcggcggcggagggacggcggcgcctacaattgc
cggagggcggagaccgactatcggcagcagccccgccgccccgagcggcggatacagaag
accgacatcactctgcttcagcgttcccgcaccgagccgacagagagccagccggacgtc
ccgtgtcccgtcccccgcggggaaccggattcccggcaccggcagctgctacgggagctc
gtccgattgtcccgggtcagttgtcccgatggctacctggacctggccgccggctctccg
cacgttcagcaaatctcccagctgctctcccttttacatcagggaaagttccaggccaga
ccaaactttcgcggaaataaatatttaagaaactacaggggtgcaacgcctgaagcagac
agaggcagcctcaaggacagcgggcagggggagagcgaggaaggagacagcgacagtgac
ggaggaaggacatcacccattgaccagctgctggaggacgggctgagtgagttgctggcc
ggcgggagctggacgtcaccgacagggctgacagtgggagagagcggagcagagaggctg
agcctcgaggacctgtgctggacattgccctcgacgctgccctcttctgactataaggag
aatgtgttcagccccgagtccatggaggcagggggtgccgtggacggagagaaggccatg
ttctctacctttggcaaaggtgggccggagcatgactctggtgcaggatcaggctccgat
tcgctcctgaccgagatgggtgccctcttccaacagctgctctcgcagaaagccgaggtg
tatagacagcctggccctgacctccttcgcagactgtctgcccgctggagtgttctgtgt
gagggggagatgtcctcgggccgatgcaggggcagccgcctccctggactgcccgaatcg
ccagcacagggacctggatctgagtag
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