Hemitrygon akajei (red stingray): 140739440
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Entry
140739440 CDS
T11019
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
haka Hemitrygon akajei (red stingray)
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haka03021
]
140739440 (chd1)
03036 Chromosome and associated proteins [BR:
haka03036
]
140739440 (chd1)
Transcription machinery [BR:
haka03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
140739440 (chd1)
Chromosome and associated proteins [BR:
haka03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
140739440 (chd1)
SLIK complex
140739440 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
CHDCT2
Motif
Other DBs
NCBI-GeneID:
140739440
NCBI-ProteinID:
XP_072923839
LinkDB
All DBs
Position
2:complement(16557886..16673386)
Genome browser
AA seq
1801 aa
AA seq
DB search
MEGHGDEDSVSNSSGDSSQSDKESGSSSESSSDGSSSQSDSNDSSDSDSGSDSASQSDSD
SSGSESNASSRGKRPIENKVLKTDGVEFWKSNPSILAVQRSGMLRKQQQLQQQQLSSNNS
SEEESSSSEDSDEDSSSEDTARHVKRRDEDWQMSGSGSEEEDFREKSTSGDSESDYQPNN
KVKSRKPQCRAKTKKVKGKGLKRPVESSDEDDDDDDEHKRSSRRQATVNVSYKEDEDAKT
DSDDLLEICGEDLPPPPEEEEEFETLERVMESRTGRKGATGAATTTYAVEAEGDPNSGFD
PLREVGEHQYLIKWKGWSHLHNTWESEETLLQQNTKGMKKLENYKKKEEEAKRWLKTASP
EDIEYLNCQQELVDDLHRQYQLVERIIAHSNQKSASGHPDYLCKWQGLPYSECSWEDGAL
MSRKFQSHIDSYTNRNQSKTIPLKECKVLKQRPRFVALKKQPAYIGSSDVLELRDYQLDG
LNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYIFHDHQLFGPFLLVVPLSTLTSWQRE
IEMWAPEMNVVVYLGDISSRNMIRTYEWMHPQTKRLKFNILLTTYEILLKDKSFLGSVNW
AFIGVDEAHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSW
EVFEEEHGKGREVGYTSLHRELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAVQKQYYKW
ILTRNYKALSKGCKGSTSGFLNIMMELKKCCNHCYLIKFPEDSDLYNRQEALQHLIRSSG
KLILLDKLLCRLKERGHRVLIFSQMVRMLDILAEYLKCRQFCFQRLDGSIKGELRKQALD
HFNAETSDDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVN
IYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGSNPTNSTPFNKEELAAI
LKFGAEELFKEPEGEEQEPQEMDIDEILCRAETHENEPGPTTVGEELLSQFKVANFSTMD
DDLEPQRNNRDWDDIIPEAQRRRMEEEERQKELEEIYLLPRMRNCAKQISFNGSEGRRRR
RRSSESDSDSISEGKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLDRLEAIA
RDAELVDKSEVDLRRLGEMVHNGCIKALRESTGQEKTAARRGKVKGPTFRISGVQVNAKL
VIAHEEELAPLHKSIPPDPEDRKKYTIPCHTKAAHFDVEWNKEDDSNLLIGIYEYGYGSW
EMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSKDLARKEAQRLAEANSRKR
KPRNKRSKAVKIVKVEDVKSDSSSPPPPSVKSSDEEGEIKDDTAGTKPSKKKLKTERDVE
EKEQEIVVKRESEDKEIKKEIKETRKDKKEKEEKKETKEKDAKKELKEKEDKDKEPIYKD
KEVKEEKVIEAKSEVKERPKKTDGSVNYPASTDPVPISEETEELDQNTFSICKERMRPVK
AALKQLDRPEKGLSEKEQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKF
TEFDARKLHKLYKHAIKKRLENSRHNDQHSSALGTQHAKLSESEKPKENSHNDDSSRDSH
SSERHHSSHYHDHHRDRHHGDSYRKSDSSRKRLYSSFSNGKDHRDRDHYRTDSRYHSESK
HRKLDEHRSRDHRSGPDTSSKESRSHADHRSHSDHRSSSEHRSHSDHRSSSEYSGHHKSS
RDYRYHSDWPVDHRPSGSGPRSPLDQRSPYDSRSPLEHRSPLEYSSDHKSTPEHIWNSRK
T
NT seq
5406 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcacggtgatgaggacagcgtcagtaacagtagtggagactcaagccaatct
gacaaagagtcaggctcaagttctgagagcagcagtgatggaagcagcagccaatctgat
agcaatgactctagtgactctgacagtggttcagattctgccagccaatctgattctgat
tcatccggttctgaaagtaatgcatcttctagaggaaagagaccaattgaaaataaagtc
cttaaaacggatggagtagagttttggaaatcaaatccaagtattttggctgtgcagaga
tctggaatgttaagaaaacaacaacaactacaacaacagcaactttcttcaaacaacagt
tcagaggaggaatcatcaagcagtgaagattctgatgaagactcatcttcagaggacaca
gctagacatgtgaaacgtagagatgaagactggcagatgtctggctccggttctgaggag
gaagattttcgagagaagagtacctcaggagacagtgagtctgactaccagcccaacaac
aaagtaaaaagcaggaagcctcagtgcagggccaagacaaaaaaggtgaaggggaaggga
ctgaagagaccagttgaatcatcagatgaagatgatgatgacgatgatgagcataagagg
agttctcgtcgtcaggcaacagtaaatgtcagctataaggaagatgaagatgctaaaacg
gattctgatgatttgcttgaaatctgtggggaggatctccctcctcccccagaagaagaa
gaagaatttgaaacattagagagggtaatggaatcgcgaacaggaaggaaaggagcaact
ggtgcagccactactacctatgcagtagaggctgagggtgaccccaatagtggttttgac
ccattgagggaggttggagagcaccagtatctgattaaatggaagggatggtctcacctt
cacaacacctgggaaagtgaagaaacgcttttgcagcagaatacaaaaggaatgaagaaa
ttggagaactataagaaaaaggaggaggaagccaagcgatggttgaaaactgcatcacct
gaagatatcgaatacttgaactgtcaacaggaattggtggatgatttacataggcagtat
cagttagtggaacgaataattgcacactccaaccagaagtctgcttccggtcatccagac
tacttgtgcaaatggcaggggctaccctactctgagtgtagctgggaagatggtgccctt
atgtcccgaaagtttcagtcacacattgattcatatactaaccggaaccaatccaaaacc
atccctttgaaggagtgtaaggtcttaaagcaaagacccagatttgttgcactgaagaaa
cagccagcgtacattggtagctctgatgtattggagctcagagactatcagttagatggc
ttaaattggttggcacactcctggtgcaagaacaatagtgttattctggctgatgaaatg
ggtctggggaaaactatacaaaccatctccttccttagttatatattccatgaccatcag
ctgtttgggcctttccttttagtagttccactctcaacgctcacttcttggcaacgtgaa
attgagatgtgggcacctgagatgaatgttgtcgtttacttgggagacatcagtagccgt
aatatgataagaacatatgaatggatgcatcctcaaactaagagattgaagttcaatatc
ttgctgacaacctatgagatcctgcttaaagacaagtcattccttggaagtgtaaattgg
gctttcatcggggtagatgaagctcatcgtttgaagaatgatgattctctactttataaa
accatgatggattttaaatcaaatcataggctgctcataacaggaactccactccaaaac
tcgcttaaagaactctggtctctccttcacttcatcatgccagaaaagttttcttcctgg
gaagtgtttgaagaggagcatgggaaaggaagagaagttggttatacaagccttcatcga
gaactggagccgttcttgttgcggagggtgaaaaaggacgttgaaaaatctctacctgct
aaagttgaacagatcttacgagtggaaatgagcgcagtgcaaaagcaatattacaagtgg
attttaaccaggaattataaagccttgagcaaagggtgtaaaggcagtacatctgggttc
ctgaatatcatgatggaacttaaaaaatgttgtaaccattgctacctcattaaattccca
gaagacagtgatttgtataacagacaggaggccttacagcacttgatccgtagtagtggg
aaattgatactgttggacaagttgctttgtcgactaaaagaacgaggccacagagttctt
atcttctctcaaatggttcgaatgctggacattctagctgaatatctgaaatgtcgacag
ttttgtttccagcgactagatggatctattaagggagaactgaggaagcaggccctggac
catttcaacgcagaaacatcagacgacttctgctttctgctatcgaccagagcaggagga
ttaggtataaacttggcatccgctgacactgtagttatttttgattcggactggaatccg
cagaatgatttacaggcacaagcaagagctcatagaattggtcagaaaaagcaggttaat
atttatcggctagttacaaagggaacagtagaggaagagataattgaaagagcaaagaag
aagatggtgctggatcaccttgttatacagagaatggatacaacggggaaaactgtgctg
cacactggctccaatcctacaaattcaactccatttaataaagaagaactggcagctatc
ttgaagtttggagctgaggagcttttcaaagaaccagaaggagaggagcaagaaccacag
gaaatggatattgatgaaatcctttgtcgtgctgaaacccatgagaatgaaccgggacct
accactgttggggaggagctgctatcccagttcaaggtggcaaacttttcaacaatggat
gacgaccttgagcctcagcgcaataacagggactgggatgacatcattccagaagcacag
cgaagaagaatggaggaagaagaaaggcagaaagagcttgaagagatctacttgcttcct
cgaatgcgcaattgtgccaaacagataagctttaatggaagtgaaggaaggcgaagaaga
agacggtcttcagagtctgacagtgactcaatttctgaagggaagcgacctaaaaaacgt
ggaagacctcggacaattcctcgtgaaaatattaaagggtttagtgatgctgagattcga
aggtttatcaagagttacaagaagtttggtggacctctggatagattggaagcaattgct
cgtgatgctgaactagtggataagtcagaagtcgacctcaggcgattgggagagatggtg
cataatggttgtattaaggctctacgagagtccactgggcaggagaagacagctgccagg
cgtggtaaagtgaaaggtcctacgttccgcatctcaggtgttcaggtgaatgctaaactc
gtcattgcacatgaagaggagcttgcacctttgcacaaatccattccaccagatccggag
gataggaagaagtataccatcccatgccatactaaagctgctcattttgatgtggagtgg
aacaaagaagatgactccaatcttttaataggcatctatgaatatggatatggcagctgg
gagatgattaaaatggaccctgacctcagtttaacgcacaagattttgcctgatgatcca
gataagaagccgcaggccaaacaattgcagaccagagctgactacctcatcaaactatta
agtaaagatctggccagaaaggaggcacaaaggcttgctgaggccaattcaagaaaaaga
aagccaaggaataaacgaagcaaagcagtgaaaattgtgaaagtagaagacgttaaaagt
gattcatcatcaccaccaccaccttcagtcaaaagctcagatgaggaaggagagatcaag
gatgatacagcaggaacaaagccctcaaaaaagaaattgaaaacagaaagagatgttgaa
gagaaagaacaggaaattgtagtcaagagagagtctgaagacaaagaaatcaaaaaagaa
ataaaagaaactagaaaagataaaaaggaaaaggaagaaaagaaagaaacaaaggaaaaa
gatgcaaagaaagaactaaaagaaaaggaggataaggataaagagcctatttataaagat
aaagaagtaaaagaagagaaagtaattgaagccaagtcagaggtgaaggagaggcctaaa
aagactgatggttcagttaattatccagcaagcactgatccagttccaatctcagaagag
acagaagaacttgatcagaatacatttagtatttgtaaagagagaatgagacctgtaaag
gccgcactgaaacagttagacaggcccgaaaagggcctttcggaaaaggagcagctggaa
cacaccaggcagtgcctgattaaaataggagaccacatcactgaatgtttgaaagaatat
tcaaacccagaacaaatcaaacaatggagaaaaaatctctggatctttgtttcaaagttc
acagaatttgatgcaagaaagctgcataaactctacaagcatgcaatcaagaaacgactg
gagaattctcggcataacgatcagcacagtagtgctcttggtacccagcatgccaaactc
tcagaatctgaaaaacccaaggagaattcacacaatgatgacagcagtagggatagtcat
tcatctgaaaggcaccattcatctcattatcacgatcatcatcgagatcgtcaccatggt
gattcctaccgaaaaagtgattcctcaagaaagagactgtattcgtcatttagcaatggc
aaagaccaccgggacagagatcattaccgaacagatagcaggtatcacagtgaaagtaag
catagaaaacttgatgaacacagaagtcgggatcaccgttctggtccagacaccagttca
aaggagagtcgctcacatgctgaccatagatctcactcggatcaccgttcaagttcagag
catcgatctcattcggatcaccgatccagttcagaatactcaggccatcacaaatcctcc
agggattatagataccactcagactggccagtggaccacagaccatctggtagtggtcca
agatctcccttggatcagagatctccatatgactctagatcaccattggaacatagatct
ccccttgaatattcctctgatcacaaaagtaccccagagcacatctggaacagccgtaaa
acataa
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