Hemitrygon akajei (red stingray): 140739845
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Entry
140739845 CDS
T11019
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03013
Nucleocytoplasmic transport
haka03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140739845 (upf1)
03015 mRNA surveillance pathway
140739845 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haka03019
]
140739845 (upf1)
Enzymes [BR:
haka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
140739845 (upf1)
5.6.2.5 RNA 5'-3' helicase
140739845 (upf1)
Messenger RNA biogenesis [BR:
haka03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
140739845 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
140739845 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
140739845
NCBI-ProteinID:
XP_072924541
LinkDB
All DBs
Position
16:25358605..25411528
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AA seq
1103 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQSQGPGDGQVNG
PDGVLQNGAVDDAVAKASQLLPELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDSILYYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAHGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHHTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKP
RKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSGQAGRPSNMYFQTHDQIGMIGASPSH
VAAMNIPIPFNLMMPPMPPPGYFGQANGPAAGRGIAKGKLSRGARQRNRSLGNQLNNQAN
LPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVA
LSQDSTYQGERAYQHGVTGLSQY
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggacgcgtacgggccgagctcgcaaacgctgaccttcctggacaccgaggag
gccgagctgctgggggccgacacgcagggttccgagttcgagttcaccgacttcactttg
ccgtctcaaacgcagactcagggccagagccaaggccccggcgacggacaggtgaatgga
ccagatggtgttctccaaaatggagctgttgatgatgcagtcgccaaagcaagtcagtta
ttaccagaactgaactttgaagaggatgaagaggatacatactacaccaaggatctgcct
ctgcatgcttgcagttactgtgggattcatgatccagcctgtgtagtttattgcaatacc
agcaagaaatggttctgtaatggccgtggaaacacttctggcagccatattgtaaaccac
ctggtgagagccaaatgtaaggaggtgactctccataaagatgggccgctgggggagact
gtcctggagtgctacaactgtgggtgcaggaatgtatttcttcttggctttatccctgct
aaggctgattctgtagttgtgctactctgcaggcaaccatgtgccagtcagagcagcctg
aaggacataaattgggatagttcacaatggcaaccattaatccaggatcgttgctttttg
tcctggctggtgaagattccttcggagcaggaacaactacgagcccgtcagatcacagca
cagcagatcaacaagctggaggaactctggaaggataatccatctgcaacccttgaggat
ttggagaagcccggagtagatgaagaaccccagcatgtcctccttcggtatgaagatgct
tatcagtatcagaacatctttgggccactggtcaaactggaggctgattatgacaaaaag
ctgaaggaatcacagactcaagataacatcactgtcagatgggacttgggtctcaacaag
aaacggattgcttattttactctgcccaaaacagactctgatatgcgtctgatgcaagga
gatgaaatctgtctacgctacaagggtgacctcgcacccctctggaaaggaattggacac
gtgatcaaagtcccggacagtatcctttattacggggatgagatcgccattgaacttcgc
agcagtgttggagccccagttgaagtcactcacaacttccaggtggattttgtctggaaa
tcaacttcatttgatagaatgcagagtgcactgaaaacctttgctgtggatgagacctct
gtgtctggatacatttaccacaagttgcttggccacgaggtagaggatgtgattattaaa
tgccagctacccaaacgcttcaccgctcatgggctgcctgatctcaatcactcacaggtc
tatgctgtgaagactgttcttcagcgccccctcagcctgatccagggaccaccaggcact
ggcaaaactgtcacctctgccactatagtctaccacttggccagacagggcaatggccct
gttctggtgtgtgctccaagtaacattgcagtggaccagttgactgagaagatccaccac
acgggcttgaaagtggtgcggctatgcgccaagagtcgtgaggctattgattcaccggtc
tcgttcttggctttgcataatcagatccgtaacatggacagcatgcctgaattgcagaag
ctgcagcagctgaaggacgagactggtgagctgtcatccgccgatgaaaaacgctaccgt
gcccttaaaaggacagcagagcgtgagctgttgatgaatgcggatgttatttgctgcact
tgtgtaggagccggcgatcctcgtttggctaagatgcagtttcgttccattctgattgat
gagagcacccaggccacagagccagaatgtatggttcctgtggtcttgggagcaaagcag
ctgatcttggtcggtgatcattgccaactaggtccagtggttatgtgcaagaaagctgcg
aaagctggtctgtctcagtcgctgtttgagcgcctggttgttctggggattcgcccaata
cgtctgcaagtccaataccggatgcacccagccctcagtgcctttccatccaacattttc
tatgagggctcactgcaaaatggtgttactgcagcggatcgtattaagaaaggtttcgac
ttccagtggccacagcctgacaagccaatgtttttctatgtgactcaaggacaggaggaa
atcgccagttcaggcacttcataccttaataggactgaggcagccaatgtagagaagatc
accaccaaacttctgaaagcaggtgccaaaccagatcagattggcatcattacaccgtat
gaggggcagcggtcatacctggtgcagtatatgcagttcagtggttctctgcacaccaaa
ctctaccaggaggtggagattgcaagtgtggatgcgtttcagggtcgagaaaaggatttc
attatcctatcgtgtgttcgagcaaatgaacatcagggcattggatttctcaatgaccct
cgccgcctgaatgtggctctgacaagggcaagatacggtgtaattattgtggggaatcca
aaggctctgtctaaacagccactgtggaatcacctgctgaactattacaaggagcagaaa
gtgctggtggagggaccactgaataatctacgtgagagcttaatgcaattcagcaaaccc
cggaagcttgtcaataccatcaacccgggagctagattcatgaccacggccatgtatgat
gctcgagaagccatcatcccaggctcagtgtatgataggagtggccaagcgggtcgccct
tccaacatgtacttccagacccatgatcagattggaatgattggagccagtcccagccac
gttgctgcaatgaacatccctatccccttcaacctgatgatgcctccgatgcctccacct
ggctattttggacaggcaaatggtcctgcagcaggtcgtggaattgcaaaagggaagctg
agccgtggggctcgtcagagaaaccgtagcctgggaaatcagttgaacaaccaggccaac
ctacccaatagccaggccagtcaagatgtggtgtcgcagcctttctctcagggcccgctt
acccagggatacatctccatgagccagccttcacaaatgagccagccaggcctgtctcag
ccagaactctcacaggacagttatctgggagatgaattcaagtctcagatcgatgtggcc
ttgtcgcaggattccacttaccagggagaacgtgcgtatcaacatggagtgaccgggctg
tcacagtattag
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integrated database retrieval system
