Hemitrygon akajei (red stingray): 140739870
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Entry
140739870 CDS
T11019
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03018
RNA degradation
haka03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140739870 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
140739870 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haka03019
]
140739870 (lsm4)
03041 Spliceosome [BR:
haka03041
]
140739870 (lsm4)
Messenger RNA biogenesis [BR:
haka03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140739870 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
140739870 (lsm4)
Spliceosome [BR:
haka03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
140739870 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
HTH_ParB
Motif
Other DBs
NCBI-GeneID:
140739870
NCBI-ProteinID:
XP_072924580
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All DBs
Position
16:26212140..26240927
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AA seq
143 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWKMPECY
IRGSTIKYLRIPDEIIDMVKEEVLSKGRGRGGLQQQKQQQQQKGRGVGGGAGRGVFGGRG
RGVGGANRGQEKKPGKLSGVKKQ
NT seq
432 nt
NT seq
+upstream
nt +downstream
nt
atgctacccctctcattactgaagacagcacagaatcatcccatgcttgtggagttgaag
aatggggagacgtacaatggtcatctggtcagctgtgacaactggatgaacatcaacctg
cgggaggtcatttgcacatctcgggatggtgataagttctggaagatgccagaatgctac
atccgtggcagcaccatcaaatacctccggatccctgatgaaatcattgacatggtaaag
gaggaggtgctttcaaagggtagaggtcgaggtggcctccagcagcagaagcagcaacag
cagcagaaggggcgaggcgttggtggaggggctgggcgaggagtgtttggtggccgtggt
cgaggggtgggcggagcaaaccgaggacaagagaagaaaccgggaaaactatcgggagtg
aagaagcagtga
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