Hemitrygon akajei (red stingray): 140740117
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Entry
140740117 CDS
T11019
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140740117 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haka03019
]
140740117 (xab2)
03041 Spliceosome [BR:
haka03041
]
140740117 (xab2)
Messenger RNA biogenesis [BR:
haka03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
140740117 (xab2)
Spliceosome [BR:
haka03041
]
Complex B
Other components
Prp19-related factors
140740117 (xab2)
Complex C
140740117 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
ARM_TT21_C
ARM_TT21
TPR_16
TPR_1
RPN7
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
140740117
NCBI-ProteinID:
XP_072925127
LinkDB
All DBs
Position
16:63150623..63229615
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AA seq
848 aa
AA seq
DB search
MPDLSQKPDVVFEEDDLPYEEEIIRNPYSVKCWIRYIEYKHSAPKHMVNMIYERALKELP
GSYKLWYNYLKQRRKQVKGRCITDPGYEEVNNCHERALVFMHKMPRIWLDYCQFLVDQCK
ITRTRRTFDRALRALPVTQHYRIWPMYLKFVRQFPVSETAIRVYRRYLKLSPENAEEYID
YLRSIDRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCHLISTNPDKVKSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQSEEDDIDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPREIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENGQIQDARTIFEKATKVN
FKHVDDLAGVWCEYGEMELRHENYDEALRLLRRATAVPAKRAEYFDSTEPVQNRIYKSLK
VWSMLADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYAMFLTEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPPKFAKTLYLLYARLEEE
YGLARHAMAVYERATKAVELLQQYEMYNIYIKRAAEIYGVTHTRGIYEKAIEVLPDEHAR
DMCLRFADMECKLGEIDRARSIYSYCSQLCDPRITPSFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKASTNATGTVSDLAPGQSGMDDMKLLEQKAQQIAEEAER
ERPKPKDKILFVRSDASRDELAELTKQANPDEIDIDDDDDDDGEEEPDEVPLEQKMVPTA
VFGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacttgtcgcaaaaacccgacgtagtgtttgaagaagatgatctaccttatgaa
gaagagatcattcgcaacccctactccgtcaaatgctggatccgttacatagagtacaaa
cattctgctcccaaacatatggtgaacatgatctatgaacgagcactcaaagaacttcct
ggcagttacaagctgtggtataattacctgaagcagcgacggaagcaagtgaaggggaga
tgcatcacagaccctgggtatgaggaggttaacaactgccatgagcgtgccctggtgttc
atgcacaagatgccgcgaatttggctggactactgccagtttctggtcgatcagtgtaag
ataacacgaacccgccgcacgtttgaccgcgccttgcgggctctccctgtgactcagcac
tatcgcatatggcccatgtacctgaagtttgtgcgccagtttccagtatccgagacagcg
atccgagtctacaggcgttacctgaagctgtcacctgaaaatgcagaagaatacattgat
tatctccgctcaatcgaccgcttagatgaggcagctgtccggcttgctgctgttgtcaat
gatgaatcatttgtctcaaaggaagggaaatcaaattatcaattgtggcatgaactttgc
catctcatttccacaaacccagacaaagtaaagtctctgaacgttggggctattatccgg
ggaggtctcactcgctttactgaccaactgggaaagctgtggtgttccttagctgattat
tacattcgaagtggccattttgaaaaggccagagatgtgtatgaggaggcaattcagacg
gtgatgactgtccgagatttcactcaggtgtttgacagttacgcccagtttgaagagagc
atgattgcagccaaaatggaaactactgcagaaatgggacaatctgaggaagatgatatt
gacttggagttgcgattggctaggtttgagcagttgataaccagacgtcccctccttttg
aacagtgtacttcttcgtcagaatccacataatgtacatgagtggcacaagcgagttaaa
ctgtatgagggaaagccacgagagataataaacacatacacagaagctgtgcagacagtc
gatccaatgaaagctactggaaaaccacattccttatgggtttcatttgcaaagttttat
gaagaaaacggacaaattcaagatgcacggactatatttgaaaaagctacaaaggtaaat
tttaagcatgtggacgatttggctggtgtttggtgtgaatatggggaaatggaactgcgc
catgaaaattatgacgaggcactccgattactgaggagagcaactgcagtaccagcaaag
agggccgagtactttgactcgacagagcctgtccagaacaggatctacaagtcgttgaaa
gtctggtccatgttagcagatctggaggagagtctcggcactttcaagtccacgaaggcc
gtgtatgacaggattatagatctccgaattgctacacctcaaatcatcatcaattatgca
atgttcttgacagaacacaactactttgaagaaagtttcaaggcttacgaacgagggatc
gccctgtttaaatggcccaacgtgtatgatatttggaacacttacctaaccaagttcatt
gatcggtatggtgggaagaaactcgagagggcacgggacctgtttgagcaggctctggat
ggatgtccaccaaagtttgcaaaaactctctacctgttgtatgccaggctggaggaagag
tacgggttagcccgacacgccatggctgtgtacgagcgagcaactaaggcagtggagctg
ttgcagcaatacgagatgtacaacatttacattaaaagagcagctgaaatttacggagtt
actcacacacggggcatttatgagaaggcaattgaggtgctgccagatgagcacgcccga
gacatgtgcctgcgattcgctgatatggaatgtaagctgggagaaatcgatcgggcaaga
tccatttactcctactgctctcagctgtgtgatccaaggataacaccatcattctggcag
acctggaaggaatttgaaatccggcatggaaatgaggacacgattcgggagatgttgcgg
attaagcgtagtgtgcaagccacgtacaacacccaggtcaatttcatgtcctcgcagatg
ctgaaagcctccaccaatgcaacaggcacagtgtctgatctggctccaggacagagcgga
atggatgacatgaagttactggagcagaaggcacaacagatagctgaagaggctgaaaga
gaacgaccaaaacccaaggacaaaattctgtttgtcaggagtgatgcgtctcgtgatgaa
cttgcagagcttacaaagcaggctaatccagatgagattgacattgatgacgatgacgac
gatgatggtgaagaagaacctgatgaggtaccactcgaacagaaaatggtccccactgcc
gtgtttggaggtctgaaggatgactga
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