Hemitrygon akajei (red stingray): 140740121
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Entry
140740121 CDS
T11019
Symbol
smarca4a
Name
(RefSeq) SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4a isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
140740121 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haka03021
]
140740121 (smarca4a)
03036 Chromosome and associated proteins [BR:
haka03036
]
140740121 (smarca4a)
Transcription machinery [BR:
haka03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
140740121 (smarca4a)
Chromosome and associated proteins [BR:
haka03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
140740121 (smarca4a)
Chromatin remodeling factors
BAF complex
140740121 (smarca4a)
PBAF complex
140740121 (smarca4a)
GBAF(ncBAF) complex
140740121 (smarca4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
140740121
NCBI-ProteinID:
XP_072925146
LinkDB
All DBs
Position
16:complement(64026890..64134698)
Genome browser
AA seq
1603 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGSMLGPSPGPSPGSAHSMMGPSPGPPSAGHSMNPQA
PGGYPTESIHQLHKAMESMHEKVLPDDPRYGQMKSMGMRSSGHSGMGPPPSPMDQHSQGY
PSPLGGPEHAPSPVPANGPPSGPPMPAGPGGLPMDGGEPQTVGQQSRGPSPFNQGQLHQL
RAQIMAYKMLARGQPIPDHLQLAVQGKRPPPGMQQQPMSSLPPPSTPATGAASVPTPGNY
NRPLGMGGSNMMPPGSAVVNQGMQCQPPGGPSKPWPEAPMANATAPTTAPQKLAPPQPTG
RPSPAPPAVPPAASPVMPPQTQSPGQPAQPPPMVQHHQKQNRITPIQKPRGLDPVELLQE
REYRLQARISHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRDTA
LETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEY
HRSVTGKMQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDRR
LAYLLQQTDEYVANLTELVRQHKAAQAAKEKKKKKKKKKQENVDGLGSAVGPDGELLDET
SQMSDLPVKVIHVESGRILSGAEAPKAGQLDAWLEMNPGYEVAPRSDSEDTGSEEEEEEE
EEEEQAATSAPPTAPEEKKKIQDPDSEEVSELDARQIIENAKQDVDDEYSAPLSSMHGLQ
SYYSVAHAVTERVDIQSTLLVNGLLKQYQVKGLEWLVSLYNNNLNGILADEMGLGKTIQT
IALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVSRISYKGSPAARRAFVPLLR
SGKFNVLLTTYEYIIKDKHVLAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLL
TGTPLQNKLPELWALLNFLLPTIFKSCNTFEQWFNAPFAMTGEKVDLNEEETILIIRRLH
KVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGK
GGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGADLYRASGKFELLDRIL
PKLRATNHRVLLFCQMTSLMTIMEDYFAYRSFKYLRLDGTTKSEDRGMLLKTFNEPNSHY
FIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS
VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETV
NQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPNWILKDDAEVERLTCEEE
EEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGNLEEIEEEVRQKKARKRKRDVDPPVVM
ATTSTRSSRDKDDDDKKKKKRGRPPAEKLSPNPPNLTKKMKKAVDAVIKYKDSSTGRQLS
EVFIQLPSRKELPEYYELIRKPVDFRKIKERIRNHKYRSLNDLERDVMLLCQNAQTYNLE
GSLIYEDSIVLQSVFTSVRQKIEKEEDSEDDSEEGEEEEEEGSESESRSVKVKIKLGRKD
KSQDRVKGRKRSSRTSKSKPIVSDDDTEEEVDEERSGTGTDED
NT seq
4812 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactccggatcctccaatgggaggcacacctcggccgggcccctccccaggacct
ggaccctcacctggatcaatgctgggccccagtcctggtccctcacctggatcggcacac
agcatgatgggaccaagtccggggcccccatccgcagggcattccatgaatcctcaggca
cctggagggtacccaacagagagcatacaccaacttcataaggcaatggaatcaatgcat
gagaaggtgctgcccgatgacccgcgctacggtcagatgaaaagcatgggcatgaggtca
agcggacacagtggcatggggccaccgcccagtccaatggaccagcattctcaaggctac
ccttctccactgggaggtccagagcatgccccgagccctgtgcctgctaatggcccccct
tcagggccccccatgcccgctgggccaggcggccttcccatggacggtggggagccccag
actgtgggacagcaaagccgaggaccctcgcctttcaaccaggggcagctgcaccagctg
cgggcacagatcatggcgtacaagatgcttgcaagaggacagcccattccagaccacctc
cagctggctgtccaggggaagagacccccgcctggaatgcagcagcagccaatgtcgtcg
ctacctccaccatctacccctgccaccggggcagcgtctgtcccaacaccaggaaactac
aacaggccacttggcatgggaggatccaacatgatgcctcctggatctgctgtagtcaat
cagggaatgcaatgccaacctcctggtggcccatccaaaccctggccagaagctccaatg
gccaatgccaccgctccaaccacagcccctcagaagcttgctccccctcagcccaccggc
cgaccctcccccgctccaccagccgtgccacccgccgcctcgccggtgatgccaccccag
acgcagtcgccggggcaaccggctcagccgccccccatggtgcaacaccatcagaagcag
aaccggatcacgcctattcagaagccacgagggctggacccagtcgaactgctgcaggaa
cgcgagtaccggttacaagcacgaatttcccatcggatccaggaactggaaaaccttccc
ggctcactggccggagacctccgcaccaaagcaaccattgagttgaaggctctgcggctt
cttaattttcagaggcagctccgtcaggaggtggttgtgtgcatgaggagggacacggcc
ctggagacggcgctgaatgccaaagcctacaagcgtagcaagcggcagtcgctccgcgag
gctcggattaccgagaagctggagaagcagcagaagatcgagcaggagcggaaacggaga
cagaagcaccaggaatacctcaacagtatcctacagcacgcaaaggacttcaaggaatat
caccgatcagtcacaggaaagatgcagaaactaaccaaagctgtggctacctaccatgcc
aacaccgagcgggagcagaagaaggagaatgaacggatcgagaaggagagaatgagaagg
ctcatggcagaagacgaggaaggctaccgcaagctgatcgaccagaagaaggaccggcgg
ctggcctacctgctgcagcagacggacgagtatgtggccaatctgacagaactggtccgg
cagcacaaagcagcgcaggcagcaaaagagaaaaagaagaaaaagaagaagaagaagcag
gaaaacgtggatggcttaggttcggctgtcggtcctgatggtgagctcctggatgagacc
agccagatgagtgacctgccagtgaaggtgatccacgtggagagtggccgaatcttgtcg
ggggccgaggcaccaaaggccggacagctggacgcctggttggaaatgaaccctgggtat
gaggtggccccacgctccgacagtgaagacactggctctgaggaagaggaagaggaagag
gaggaggaggagcaggcggccacatcagcaccacctactgcccccgaggagaagaagaaa
attcaggatccagacagcgaagaggtgtctgagctggacgccaggcagataatagagaat
gccaagcaggatgtggatgacgagtacagtgcgccgctgtccagcatgcacggtctgcag
tcctattactcagtcgctcatgcggtgactgagagggtggacattcagtccaccctgctt
gtgaacggtttactgaaacaatatcaggtcaaaggtctggagtggctcgtgtcgctctac
aacaacaacctgaacgggatcctcgccgatgaaatgggcctggggaagaccatccagacc
atcgccctcatcacatacctcatggaacacaagcgcatcaatggaccattcctcatcata
gtacctctctcgacgctttcaaactgggcttatgagttcgataagtgggctccgtctgta
tcacggatatcttacaagggttctcccgcagctcgaagggcctttgttccactcctcaga
agtgggaagttcaacgtcttactcaccacctatgagtatataatcaaggacaagcatgtt
cttgccaagatccgttggaagtacatgatcgtggacgagggtcaccggatgaagaaccac
cactgtaagctgacacaggtgttgaacacacactatgtggctccacgtcgcctcctgctg
actggcaccccgctgcagaacaagctgcccgagctgtgggcgcttctcaacttcctgctg
cctaccattttcaaaagctgcaacacatttgagcagtggttcaatgctccctttgccatg
acgggggagaaggtggatttgaacgaggaggaaaccattctgatcatccgccgcttgcac
aaggttctccgcccctttctgttacggcgattgaaaaaggaagtggaagctcagcttcct
gagaaggtggaatacgtcattaaatgcgacatgtcagctctgcagagggtgctgtaccgt
cacatgcaggcaaagggcgtgctgctgaccgatggctcagagaaggacaagaagggcaaa
ggtggcacgaagaccttgatgaacaccatcatgcagttgaggaagatttgtaaccaccca
tacatgttccagcacattgaggaatctttctcagaacacttgggatttactggaggcatt
gtacaaggagccgatctataccgagcctcagggaagtttgaactgctggacagaattctc
cccaagttgcgggcaaccaaccacagggtactactcttctgccaaatgacctcactgatg
accatcatggaagactactttgcataccgcagcttcaagtacctccggctggatgggacc
accaagtctgaggaccgcggcatgcttctgaagacgttcaatgagcccaactctcattac
ttcatctttctactcagcactcgggctggaggcctgggcttgaaccttcaggctgcagac
accgtggtcatcttcgacagtgactggaacccacaccaggatttacaagctcaggatcgt
gctcaccgaatcgggcagcagaatgaagtgcgcgtgctgcgactctgcactgtgaacagc
gtggaggagaagatccttgcggcagccaagtacaagctcaatgtcgaccagaaggtcatc
caggctggcatgttcgaccagaagtcgtcgagccatgagaggcgagccttcctccaggcc
attctggaacatgaggagcaggatgaagaggaagacgaggttcctgatgatgagacggtg
aaccagatgatagccagacacgaagaggaatttgatctcttcatgcggatggaccttgac
cgtcgccgggaagaggccaggaacccgaagcgaaagccacggctaatggaggaagatgag
cttccgaactggatcctgaaagacgacgctgaggtggagaggctgacgtgtgaagaggag
gaggagaagatgttcgggcgaggatcgcggcagcgcaaggaggtggactacagcgactct
ttaaccgagaaacagtggctcaaggccatagaagagggcaacctggaggagatcgaagag
gaggtgcgccagaaaaaagcccgcaagcggaagcgggacgtggaccctccggtagtcatg
gcgaccaccagcacacgcagcagccgggacaaggacgacgacgacaagaagaagaagaag
cgaggacggccgccggccgagaaactgtcaccaaacccaccaaacctcaccaaaaaaatg
aagaaggctgtggatgccgtcatcaaatacaaggacagtagtactggccgacagctcagt
gaagtttttatccaacttccatctcgcaaggagcttcccgagtattacgagctgatccgc
aagccggttgacttccggaagatcaaggagcggatccgtaaccacaagtatcgcagcctc
aatgacctggaaagagatgtgatgctgctgtgtcagaacgcacagacgtacaacctggag
ggttcactgatctatgaagattccattgtgctccaatccgtttttactagcgtacggcag
aagatcgaaaaggaagaggacagtgaggatgatagcgaggaaggagaggaggaggaagaa
gaggggtcggagtcagaatctcgatcagtgaaagtgaagattaagctgggccggaaggac
aagagtcaggatcgagtgaaagggcggaaacgctctagccgcacctccaagtccaaacct
attgtaagcgatgatgacacggaggaggaagtggatgaggaacggtcaggaactggtaca
gatgaagattaa
DBGET
integrated database retrieval system
