Hemitrygon akajei (red stingray): 140740601
Help
Entry
140740601 CDS
T11019
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140740601 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haka03019
]
140740601 (edc4)
Messenger RNA biogenesis [BR:
haka03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140740601 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
140740601 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Prp19
WDR55
EIF3I
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
140740601
NCBI-ProteinID:
XP_072925993
LinkDB
All DBs
Position
17:complement(35938764..36043698)
Genome browser
AA seq
1398 aa
AA seq
DB search
MASSPPPPPLPPPTSAAKMDIQNATQHLRDMLKLDRVSESTVNGQKKTMPYNGELNGLLV
PDPIAAGDGPVLRESNHANAHRLNQQETQEIYLSGDDSSNCVISAKEVEIVASNDSSVSN
KARGSNKVKIQPVAKYEWEQKYYYGNLIAVSNQYLAYTIRGTNSIGMVRVLSIGTAERTL
LKGFTGAVADLGFAHLNSNQLACVDEAGNLFVWQLNEENGKIQEKIVMHIKRPDGTPLNA
NRRIIWCPFIPEENEENDEGSQTLAVLHEDRAEVWDLDMLRNSKSTCPVDATDIKEGVII
VKGHTAPISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPRCLHEWKPHDGGPLSCLL
FCDNHIKQDPEVPFWRFLITGASQNRELKMWCTVSWTCLQTIRFMPDPLNTNVQPSLKAS
LDLSAEYLILSDVQRKVLYVMELHQNQDDGKAHFVSISEFLLTLPVLSFGIQDVSRCRPR
HTEVLPAEEDSETLSAEGNPGPIESSVVQIKLYCVHTKTLQDVQIYFQPHQNAREPSAAS
HEDFNHLADVSIEGASSDKGSGRGSQHDLRRIVDLPTPADFLSVANDVKPKLMTPDAFMT
PSALLQQISVSPGSSVSTLTAVTGLSTSSANETGASRPTEDLCLSPKVTLESVTLSGSTS
NSVQASPRNNSVQLIPGLSDQLPTKPLQVTGANSSLPLELQSVDPLCVPQSSPTRERSPD
VISSASTAMSQDIPEIASETLQRAFAGSVLASEVLEPNHHMDSMASAASALHLLSPRSRP
NSEHSHHSLDMPQMEVERLSTPSLLETVLSQDNTAGENVASQPWPAAPDVTRETRNSINE
SSREVMQEKHKNSTFHRHPYQLHQHDSQDASAEQSDHDEEVASLASTSCSFGSKSASHRL
PVKDWKSKISPRSSPKLKRKNKKEDGETTQSPRTEQQHQFNTNQQEELLSMIRSQQRELC
ELRQNQLELVQRLTDHMDAVQGSIMGHVERIMVTQQEQEQRRTDRILAEGRERNGQFQEQ
FSHQLSQTLANSISNRIEKTVRDEMKKSLPQSISKSLEPVSGQLNNQIAAKLAAIEGVLK
ENVTKMVKSKNTAESIGRAAADALQGPIQSTYREAFQSIVVPVFEKACQSMFQQINDSFK
QGTQEYIQQLETHLQSKKAQEQESRDPMISQLQQMTDHFQNATDHLAATITNGMRSEMQH
QLHIIVGNLQESILTQVQRIVKGEVGLAMKEQQAAVASSIMQAMRSAAGTPIPSTHMDFQ
SQQAHILQLLQQGQLNQAFQQALTAADLNLVLYVCETVDSHLVFGQHPCPLTQPVLLSLI
QQLSTDLNSRTELKLGYLEDAIMNLDHTDPVARDHMGSVLNQVRQKLYQFNQAEPPNNVS
KRARRLAMMLQGLMTPLS
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtctcctcctcctcctcctctgccgccgccgacctctgccgctaagatggac
attcagaacgccacgcagcacctgcgggacatgttgaagctggaccgcgtgtccgaatca
acagttaatggccaaaagaaaactatgccctacaatggagaactgaatggattgttggtt
cccgatcctattgcagctggcgatggaccagttctcagagagtcaaaccacgccaatgca
cacagactgaaccagcaagaaacccaagagatatatctctctggtgatgacagttcaaac
tgtgttatatctgccaaagaagtggaaattgtagcaagcaatgactccagtgtcagtaat
aaggctagaggtagcaacaaggtaaaaatacaacctgttgcaaaatatgaatgggagcag
aaatattactatggcaacctcatagctgtgtccaatcagtacttggcatataccattcgt
ggaactaatagcattggcatggtacgggttttgagcattggtacggctgagcggacttta
ctgaaaggatttactggtgctgttgctgatttgggttttgcacacctcaactctaaccaa
ctagcctgtgttgatgaggcaggcaacctttttgtctggcaactaaatgaagaaaatgga
aaaatacaggaaaaaattgtaatgcacattaagagaccagatggaacacctttaaatgca
aacaggagaatcatctggtgcccctttattccagaagaaaatgaggaaaatgacgaaggc
agtcaaacgcttgctgttttacatgaagatagggctgaggtctgggatctggatatgcta
agaaacagcaaaagcacttgtcccgttgatgcaacagatataaaggaaggtgttatcatt
gtgaaggggcacacagctccaatcagtgaaggagctttatcaccggatggaacagtcctt
gcaactgcaagccatgatggatatgtgaagttttggcagatctatatagaggggcaagat
caaccaagatgtcttcatgaatggaagccccatgatggtggaccattatcttgtcttctc
ttttgtgacaatcacataaaacaggatccagaagtcccattctggcgtttcttaattact
ggagctagtcagaatcgagagctgaagatgtggtgtactgtgtcatggacttgtttacaa
acgatcaggtttatgcctgaccctcttaatactaatgtgcaacctagtctgaaagctagc
ttggatctatctgcagaatatctaatcctcagtgatgtacagagaaaagtattgtatgtg
atggagctacatcagaatcaggatgatggcaaagcccattttgtttccatatctgaattc
ttgcttaccctcccagtgctcagttttggcattcaggatgtcagcagatgtcggccgagg
cacacagaggttctgcccgctgaggaagacagtgagactttaagtgcagaaggaaatcca
ggccccattgaatcttcagtagtacagataaaattgtactgtgtacacaccaaaacactt
caggatgtgcaaatttatttccagccacatcagaatgcaagagaaccctctgctgcttcc
catgaagatttcaaccacctagcagatgtgagcattgagggtgcatcgtctgataaaggc
tctggtagaggatctcagcatgacctgcgtcgtatagttgatcttccaacacctgcagat
tttctttctgttgctaatgatgtgaaaccaaagttaatgactccagatgctttcatgact
cctagtgctttgttgcaacagatttctgtgtcaccaggaagcagtgtaagcacattaact
gcagtgactggtttgagtactagctctgctaatgagactggagcatcaagacctactgaa
gacttgtgcctaagtccaaaggtgacattggagagtgtgactctcagtggaagcacaagc
aacagtgtccaagccagtcccagaaacaattctgtgcagcttatcccagggctttctgac
cagcttcctacaaaacctcttcaggttactggtgctaactcatcacttcctttggagctt
cagtctgtggaccccctttgtgtgcctcaaagttcaccaacacgggagcgttcccctgat
gtgatctcttctgcttccacagcaatgtctcaggacatcccagaaatagcctcagagacc
cttcagcgtgcatttgcaggctctgtgttggccagtgaggttctggagcctaaccaccat
atggatagcatggcctctgcagcttcagccctgcacctgttatctccaagaagtcggcct
aactcggaacatagccatcactcactagatatgccgcagatggaagtggaacggctgagc
actccatcacttttagaaactgttttgtctcaggataatacagcaggggagaatgttgcc
agtcagccttggccagcagcacctgatgtaactcgagaaactcgtaacagcatcaatgag
agctctagagaagttatgcaagagaagcacaagaactcaaccttccatcgacatccgtac
cagctacaccaacatgacagtcaggatgccagtgctgaacagagtgatcatgatgaagag
gttgccagtcttgcttccacgtcatgcagctttggttcaaaatctgcctctcatcgactt
ccagttaaagactggaaatcaaagatatctccacgatcctctccaaagttgaagagaaaa
aacaaaaaagaagatggggagaccacacagtccccgaggacagaacagcagcaccagttc
aacacaaaccaacaggaggagttgctgtctatgatacgcagtcaacagagggagctctgt
gaattgagacagaatcagttggaacttgtacaaaggctcactgatcacatggatgcagtc
cagggctccattatggggcacgtggagcgaattatggtgacgcaacaagaacaagaacaa
agacgaacagataggatcttggcagaaggacgagaaagaaatggacagtttcaggagcag
ttctctcatcagctatctcagactttagcaaattcaatcagtaatcgtatagaaaagact
gttcgtgatgagatgaagaaatccttaccacaatctatttccaaaagtttggagccagtg
tctggccagttgaataatcagattgcagccaagcttgcagcgattgaaggagtattaaaa
gaaaatgtaacaaaaatggtaaaatctaagaacactgcagaaagtattggaagagctgcg
gctgatgctttgcaaggaccaatacaatctacgtatagagaggcattccagagcatagtt
gtaccagtgtttgaaaaagcatgccagtcaatgttccagcaaataaatgacagcttcaaa
cagggaacacaagaatatattcagcaacttgagactcaccttcagtcaaagaaggcccaa
gagcaagaaagcagagatccaatgatcagtcagctgcagcaaatgactgatcacttccag
aatgccacagatcatcttgctgctaccatcacaaatggtatgcgttcagagatgcaacat
cagcttcacatcattgttggcaatttgcaggaatcgattttaactcaagttcagagaatt
gttaaaggagaagttggcctagcaatgaaggaacaacaggctgctgttgcttctagcata
atgcaggccatgcgatcagctgctggcactccaattccatcaactcacatggatttccaa
tcccagcaggcccatattttgcagctgttacaacagggacaacttaaccaagcttttcaa
caggccttgactgcggcagatctcaacctggtactttatgtctgtgaaactgtggattct
cacctggtctttggtcagcatccgtgtcccctaacccagccagttttgctttcacttatt
caacagctctccacagatctcaactctcgcacagaattaaaacttggttacctggaagac
gcaatcatgaatctagatcacacagacccagttgccagggatcatatgggttctgtttta
aatcaagtgagacagaaactgtatcagttcaaccaagcagaacctcccaacaatgtgagt
aaaagagctcgaagacttgcgatgatgcttcagggactgatgactccgctgagttaa
DBGET
integrated database retrieval system
