Hemitrygon akajei (red stingray): 140740908
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Entry
140740908 CDS
T11019
Symbol
utp4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
140740908 (utp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
haka03009
]
140740908 (utp4)
Ribosome biogenesis [BR:
haka03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
140740908 (utp4)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_Prp19
WDR55
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_EML
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_NUP159_NUP214
Beta-prop_CAF1B_HIR1
Beta-prop_Vps41
Beta-prop_WDR19_1st
Frtz
Beta-prop_TEP1_2nd
DUF7165
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
140740908
NCBI-ProteinID:
XP_072926644
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Position
17:91053326..91143875
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AA seq
682 aa
AA seq
DB search
MGEFRVHRVRFFDLVPPAIRSLDYNHATQRLALARADGSLEIFNFASNFIQEKVIPGDNR
RLIEAISWIGQDRLLSVGLSGEIIEFDLQRLRPKYTLDAFGGPLWCMSCNSEETHLAVGC
DDGTVKLFEIVPGKLQFERNLDHQKGRVISLAWHKSGKMIVTGSLGTIRVFDVKSGHCTR
HIRVDRGDKVYYNKKCVVWSISFLSDYTIVSADSLGKIQFWDWKTGTLLKTHPVTKCDVM
SLTVNKAEDSIAVGTAEGTVVQFQRLDVKSEVAGSQWVRTKTFKHHSHDVRAIVHAMSAL
VSGGVDSQLVIRPLMDQVETKSYETALRKVLFPHRNLVCCSQKENLLLFQFPVRLELWRL
GSSHVRGVPGDVLPISKKPEKLLELKSKSCNQIRCCAMSPCGTWIAFSTINRLRLYRIQY
RNTSITVNMIRQTVKTLLPAHRLLFNADSTRLIIGSDHSQIQIVDLGMLGSKKIHTFTPK
TVSREHICLLAVSADGSWLAAASYSCEINIYNLAELKHHCNVPVYNHLPTAMAINPHTNN
LITVHADQQIFEFSISEKKYTEWSRKVQQHGLPTLWLERDTPIIHVTFNPRVSTQIIVHD
TYMFCIIDQSLPLPSEESDINNQPVPVSGRKNWEHAFKVCKKFKPLLHLELLMDDSLVVV
ERPMMEIISQLPMPVRKKKFAT
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagtttcgcgttcaccgtgtccggttcttcgacctcgtgccgcccgccattcgc
agcctggattacaaccacgccacccagcgcctcgccctcgcccgtgctgatggctcgctt
gagatcttcaacttcgctagtaacttcattcaggagaaggtgattcctggagataacagg
aggttgattgaggcaatcagctggattggccaggatcgactgctgagtgtgggattgagt
ggagaaatcattgagtttgacctgcagaggctccgtcccaaatacacattggatgctttt
ggaggtcccctttggtgtatgagctgtaacagcgaggaaactcacctagcggttggctgt
gatgatggcactgtcaagctgtttgagattgttcccggaaagcttcagtttgagagaaat
ctggatcatcaaaaaggtcgtgtaatttccctagcctggcacaaatcaggcaaaatgatt
gtgacggggtcacttggtactattcgggttttcgatgtgaagtctggtcactgcacacgc
catattcgtgtggatcgaggtgataaagtttattacaataaaaaatgtgtggtatggagc
atcagttttctgagtgattacactattgtaagtgcagactcattggggaaaatacagttc
tgggattggaagactggaactctgctgaaaacacatcctgtcaccaagtgtgatgtgatg
tcattgactgtgaataaggctgaggacagcattgctgtagggacggccgagggaactgtt
gtccaattccagaggcttgatgtaaaatcagaagttgctggctctcagtgggttcgtacg
aagacatttaagcatcactcacacgatgtgagggctattgttcacgccatgtctgctctt
gtctctggaggtgtggattcccagcttgtcattcgccctctgatggatcaagtggaaacc
aagtcatatgaaactgctcttcgcaaggttctctttccacatcgaaacttggtgtgctgt
agccaaaaggaaaatctgctcttgtttcagttcccagtgcggcttgagttatggagattg
ggcagctcgcatgttagaggcgttcctggggatgttctaccaatcagcaagaagccagag
aaattgttggagttaaaatccaagagttgcaatcaaatacggtgctgtgcaatgtctcct
tgtggaacctggattgcattctcaactatcaacagactccgcctgtatcggatacagtat
aggaatacttccatcactgttaatatgatcaggcaaacagtgaagacattgctgccagct
catcggttgctctttaatgctgattccaccaggctgatcattggctcagatcatagccag
attcagattgtggatctagggatgttgggttctaagaaaatacatactttcactccgaaa
actgtttctcgtgagcacatctgtcttttggcggtgagtgcagatgggagctggctggcg
gctgcaagttacagctgtgaaatcaacatctataaccttgcagagttaaagcatcactgc
aatgttccagtctataaccaccttcccactgcgatggccatcaatccacacaccaacaac
ctgatcactgtacacgccgatcaacagatttttgaatttagcatcagtgagaagaagtac
acagagtggagccgtaaagtacagcaacatgggctgcccacactctggctggaaagggac
acacccatcatccacgtcaccttcaatcctagagtgagcacacagatcatcgttcatgat
acatacatgttttgtatcattgaccagtcactgcccctgccctctgaggaatcagatatt
aataaccagccagtgcctgtaagtggtcgtaagaactgggagcatgccttcaaagtctgt
aagaaattcaagcctttgctccatctggagctgttgatggatgactctcttgttgtggtg
gagcgtcccatgatggagatcatctcgcagctgcccatgccggtccgaaagaagaaattc
gccacatag
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