Hemitrygon akajei (red stingray): 140741297
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Entry
140741297 CDS
T11019
Symbol
pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140741297 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haka03019
]
140741297 (pan2)
Enzymes [BR:
haka01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
140741297 (pan2)
Messenger RNA biogenesis [BR:
haka03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140741297 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
140741297 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
Beta-prop_THOC3
Motif
Other DBs
NCBI-GeneID:
140741297
NCBI-ProteinID:
XP_072927437
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All DBs
Position
18:complement(34533682..34647226)
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AA seq
1234 aa
AA seq
DB search
MNFNGLDSGLGEYTSSLHPGISASLERSIEHSLDPRLDPALLQNMDLEGDGVQLDGMPES
VHLMEGVYSELHTVVAEVGVPITTSHFDFQDELLWVGSHGGHVTSFFGPTMERYSSFQVN
ATDDVRQIQTIESGILFLNKNNLKGFTRGGLIMFDYVMDEAEDMHSLLLTDNNSVLLGGL
QNHVREIDLNAVQESEKYIVEVPGVTIMRQSNRFFFCGHSSGKVSLRDLRNFKLEHEFDA
YSGSLSDFDVHGNLLVTCGFSNRINGLSCDRFLMVYDLRMMRAISPLQVHVDPLFLRFIP
TYTSRLAIISQSGQCQFCEPTGLASPADIFHINTVGQLVMSFDVSSSKRALIFGDSGGCV
HLWADSPSATFNPYSREIEFPMPCMVDTLPHLDWNDELLPLSLIPVPLITDSLLSDWPTA
NCVVTPRRAPPVDLEILRTMKKVGFIGYAPNPKTKLRNQVPYKLKEMDVECDNYNQIPES
PIGREEDTHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQV
LYLLEPIRCHVQNHLCQKEFCLGCELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALG
LILADSDEATGKVNLGRLIQSWNRFILTQLHQETQEQEGPQAYRSVMGSTFGSSGESVIG
KLFGCEVENCSTCRCGKETVRVSSSLLFTLQYPDINIVDKTIRQYEFAEVLKRSICLEQN
TQAWCENCEKYQPTVQTRNIRCLPDVLVINCEVNSTKEAEFWKCQAEYELRNKMRKEDLE
AIRMKENNPTEWEALCNAEGLSFYTSIEELKNIWIPDSIKMKLTKNKELEVTNWIENEGL
SSLEDEENTYLYDLVVTVAHILDPRTGGSLVAHIKVGETYHQRKEGVTHKQWYLFNDFLI
EPIDKCEAMQFDLNWKVPCILYYARRNLNSKYDLTIKNPIEASVLLAEASLARKQRKCHA
TFIPLMLNEMPQPNDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVRGQGP
NEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDVGVK
FVGHGLQKDFRVINLMIPKEQVIDTVYLFHMPRKRMISLRFLAWYFLELKIQGETHDSIE
DARTALQLYRKYLELTKHGMDVDEFRKILKGLYEKGRKMDWKVPESEEVQSSPKTKLGTR
YYPEQLPVTFYRSELQSKECWPGHWENTLLQSTK
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaatggtctggattctggccttggagagtacacatcatccttgcaccctggc
atcagtgcttccctggaacgctcgattgagcattcactggatcccagacttgacccggcg
ttgctgcagaatatggacttggaaggcgacggtgtgcagttagatggcatgcctgaatct
gtacaccttatggaaggcgtgtattccgagctgcacacagttgtggcagaagttggagtc
cctataacgacttcgcattttgactttcaagatgaattgctttgggtgggaagtcatggg
ggtcatgtaacatctttctttggtcctactatggaacgatactcatcctttcaagttaac
gccacagatgatgtacgtcagatacaaacaatagaaagtggaattctctttttgaataaa
aataacctgaagggttttactcgaggaggccttataatgtttgattacgttatggatgaa
gctgaggatatgcacagcctcctcctcaccgacaataactcagttctgctggggggcctt
cagaatcatgtcagagaaatagacttaaatgcagtacaagaaagtgaaaagtacatcgtt
gaggttccaggtgtcacaatcatgcggcagtctaaccgcttcttcttttgtggacattca
tcaggaaaggtatctctccgagatttaagaaactttaagttagaacacgagtttgatgct
tactctggaagcctctctgattttgatgtacatgggaacctgctggtgacatgtggcttc
tcaaatcgaataaatgggctgtcatgtgacagatttctgatggtatatgacctacgcatg
atgcgggctattagccccttgcaggttcacgtggatcctctcttcctgagatttattcct
acatatacttcaaggctagccatcatctctcaatcaggacaatgccagttttgtgaacca
acaggccttgcaagtcctgcagatattttccacataaacactgtgggacagttggttatg
tcatttgatgtatcttctagcaagcgagcattaatatttggagactctggagggtgtgtg
catctatgggcagactcgccaagtgctacattcaatccatactcccgtgagattgaattt
ccgatgccatgcatggtagatacactgccacatctggactggaatgatgagctcttgcct
ttatccctcattccagtacctctcatcacagattctctgttgtctgactggccaacagca
aactgcgttgtcacacccagacgagccccacctgttgaccttgagatattgcgtacaatg
aagaaagttgggtttatcggttatgccccgaatcccaaaacaaagctgagaaatcaggtt
ccatataaattaaaggagatggatgtagaatgtgacaactacaatcaaatcccagagtct
cctattggaagggaggaggatactcatctctacatggtcccaaagaaatatcgaaaggtt
actatcaaatattcaaaacttggtttggaagactttgatttcaagcactacaacaagact
ttgtttgcggggctggagccacacattcccaatgcttactgcaactgcatgattcaggtg
ttgtatttactggagcccatccgctgccatgttcaaaaccatctgtgtcagaaggagttt
tgcttgggctgtgaacttggatttctatttcacatgctcgatctctcaagaggtgaccca
tgtcaggccagcaatttccttcgtgctttccgaactattcccgaggcatcagctctgggc
ttgatcttggcagattcagatgaagcaactggaaaggtgaatcttggcagactcatacaa
agctggaaccggttcatattgacgcagctacaccaggagacacaggagcaggaaggacca
caggcctatcggagtgtcatggggagtacgtttggatcctctggtgaatctgtaataggg
aagctgtttggttgtgaagttgagaactgtagcacttgccgttgtgggaaggaaactgtt
cgagtttcttcaagcctgcttttcacattgcaatatcctgatataaatattgttgacaaa
actattcggcagtatgaatttgctgaagtgctgaaaagaagtatctgccttgaacagaac
acccaggcctggtgtgaaaattgtgagaagtaccagcccacggttcaaaccaggaatatt
cgatgcttaccagatgttcttgttattaactgtgaagtcaatagcactaaagaagctgaa
ttttggaaatgccaagcagagtacgaattgcgcaacaaaatgaggaaggaagatttggaa
gcaataagaatgaaagaaaataatccaacagaatgggaagcactttgtaatgctgaaggt
ctgagtttctatacatcgattgaggaattgaaaaatatttggataccagattccatcaag
atgaagctgactaaaaataaggagttagaagtcacaaactggattgaaaatgaaggcctg
tcctctttagaagatgaagagaacacctatttgtacgatctggtggtgactgtggcccat
attttagatcctcggactggtggcagtcttgtggcccatattaaagttggggagacttat
caccagcggaaagagggtgtcactcataaacagtggtatctgtttaatgacttcctcatt
gaaccaattgacaagtgtgaagctatgcagtttgatttaaattggaaggtcccctgcatt
ctgtattatgctagacgaaatctgaattccaagtatgatttaaccataaagaatccaatt
gaggccagtgttttgctggcagaagcatctctggctagaaaacagcgaaaatgtcatgca
actttcattccactaatgctgaatgaaatgcctcagcccaatgatttagtgggtttggat
gcagagtttgtcacactaaatcaggaagaagcagagctgcgaagtgatgggacaaaatcc
accatcaagcccagccaaatgtcggttgcaaggatcacatgtgtgcgaggtcagggacca
aatgagggagttccctttattgatgattacatctccacacaggagcaggttgtggactac
ctgactcagtattctggaatcaagcctggggaccttgacgccaaaatctcatccaaacac
ctaaccaccttgaagtcaacatacctgaaactaaggttcctcattgatgttggagtgaag
tttgtgggacatgggctgcagaaggatttcagagtcataaaccttatgattccaaaggag
caagtgatagatacggtatatttgtttcacatgccacggaaaaggatgatttcactgcgt
ttccttgcatggtattttctagagcttaaaattcagggagaaacacatgacagcatagag
gatgcacgcacagcactgcaactgtaccgcaagtatctggagttgacaaagcacggcatg
gatgttgatgaattccgaaaaatactcaagggcctatatgagaaaggcagaaagatggac
tggaaagtaccagagtctgaagaagtccagagcagtccaaaaacaaagcttggtacccgt
tactacccagaacaacttccagtgacattttacaggtcagagttgcaatcgaaggaatgt
tggcctggacactgggagaacaccctgctacaaagcacaaaataa
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