KEGG   Haloterrigena alkaliphila: J0X25_00020
Entry
J0X25_00020       CDS       T07793                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
hakz  Haloterrigena alkaliphila
Pathway
hakz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hakz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    J0X25_00020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hakz03019]
    J0X25_00020
Messenger RNA biogenesis [BR:hakz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     J0X25_00020
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B_2 Lactamase_B RMMBL
Other DBs
NCBI-ProteinID: QSW99379
UniProt: A0A8A2VBE6
LinkDB
Position
2901..4253
AA seq 450 aa
MEIEIATIGGYEEVGRQMTAVRAGDDVVIFDMGLNLSQVLIHDNVETERMHSLDLIDMGA
IPDDRVMSDLEGDVKAIVPTHGHLDHIGAISKLAHRYDAPVVATPFTIELVKQQIEGEQK
FGVENDLIKMDAGETMSIGDSGKVELEFVNVTHSIIDAINPVLHTPEGAVVYGLDKRMDH
TPVIGDPIDMERFREIGREGNGVLCYIEDCTNANKKGRTPSENVAREHLRDVLYSMEDYD
GGIVATTFSSHISRVTSLVEFAKDIGRQPVLLGRSMEKYSGTAERLDFADFPDDLGMFGH
RKSVDRTFKRIMNEGKENYLPVVTGHQGEPRAMLTRMARGETPYELDDGDKVVFSARVIP
EPTNEGQRYQAEKLLGMQGARVYDDIHVSGHLCQEGHYEMLDALQPQHVIPAHQDMKGYS
SYINLAENQGYKLGRDLHVTRNGNLIQLVD
NT seq 1353 nt   +upstreamnt  +downstreamnt
atggaaatcgaaatcgcaacaatcggcggctacgaggaagtcggccggcagatgactgcc
gtccgcgccggcgacgacgtcgttatcttcgacatgggtctgaacctctcgcaggtcctg
atccacgacaacgtcgaaaccgagcggatgcacagcctcgatctgatcgacatgggtgcg
atccccgacgatcgggtcatgagcgacctcgagggcgacgtgaaggccatcgtgccgacc
cacggccacctcgaccacatcggcgccatctccaagctagcccaccggtacgacgcgccg
gtcgtcgcgacacccttcacgatcgaactggtcaaacagcagatcgagggcgagcagaag
ttcggcgtcgagaacgacctgatcaagatggacgccggcgagacgatgtcgatcggcgac
tccggcaaggtcgaactcgagttcgtcaacgtgacccactcgatcatcgacgcgatcaac
ccagtcctgcacacgccggaaggcgccgtcgtctacggtctggacaaacggatggaccac
acgcccgtcatcggcgacccgatcgacatggagcggttccgcgaaatcggtcgcgagggc
aacggcgtactgtgttacatcgaggactgtacgaacgcgaacaagaaggggcgaaccccc
tcggaaaacgtcgcccgggaacacctccgggacgtcctctacagcatggaggactacgac
ggcggcatcgtcgccaccacattctcgagtcacatctcgcgcgtgacgtcgctggtcgag
ttcgcgaaggacatcggccgtcaaccggtcctgctgggtcgctcgatggagaagtactcg
ggcaccgcggagcgactggacttcgccgacttccccgacgacctcgggatgttcggccac
cgcaagtccgtcgaccgcacgttcaagcggatcatgaacgagggcaaggagaactacctg
ccggtcgtcaccggccaccagggcgaaccgcgcgcgatgctcacccggatggcccgcggc
gaaacgccctacgaactggacgacggcgacaaggtcgtcttctccgcccgcgtcattccg
gagccgaccaacgagggccagcgctaccaggccgagaaactgctcgggatgcagggcgcc
cgcgtctacgacgacatccacgtctcgggccacctctgtcaggagggccactacgagatg
ttagacgcccttcagccccagcacgtcatcccggcccaccaggacatgaaaggctactcc
agctacatcaacctcgctgagaatcaggggtacaagctcggacgagacctgcacgtcacg
cgcaacggcaacctcatccagctcgtcgactga

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