Haloterrigena alkaliphila: J0X25_00020
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Entry
J0X25_00020 CDS
T07793
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hakz
Haloterrigena alkaliphila
Pathway
hakz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hakz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J0X25_00020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hakz03019
]
J0X25_00020
Messenger RNA biogenesis [BR:
hakz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J0X25_00020
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Ortholog
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GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
QSW99379
UniProt:
A0A8A2VBE6
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Position
2901..4253
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AA seq
450 aa
AA seq
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MEIEIATIGGYEEVGRQMTAVRAGDDVVIFDMGLNLSQVLIHDNVETERMHSLDLIDMGA
IPDDRVMSDLEGDVKAIVPTHGHLDHIGAISKLAHRYDAPVVATPFTIELVKQQIEGEQK
FGVENDLIKMDAGETMSIGDSGKVELEFVNVTHSIIDAINPVLHTPEGAVVYGLDKRMDH
TPVIGDPIDMERFREIGREGNGVLCYIEDCTNANKKGRTPSENVAREHLRDVLYSMEDYD
GGIVATTFSSHISRVTSLVEFAKDIGRQPVLLGRSMEKYSGTAERLDFADFPDDLGMFGH
RKSVDRTFKRIMNEGKENYLPVVTGHQGEPRAMLTRMARGETPYELDDGDKVVFSARVIP
EPTNEGQRYQAEKLLGMQGARVYDDIHVSGHLCQEGHYEMLDALQPQHVIPAHQDMKGYS
SYINLAENQGYKLGRDLHVTRNGNLIQLVD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgaaatcgcaacaatcggcggctacgaggaagtcggccggcagatgactgcc
gtccgcgccggcgacgacgtcgttatcttcgacatgggtctgaacctctcgcaggtcctg
atccacgacaacgtcgaaaccgagcggatgcacagcctcgatctgatcgacatgggtgcg
atccccgacgatcgggtcatgagcgacctcgagggcgacgtgaaggccatcgtgccgacc
cacggccacctcgaccacatcggcgccatctccaagctagcccaccggtacgacgcgccg
gtcgtcgcgacacccttcacgatcgaactggtcaaacagcagatcgagggcgagcagaag
ttcggcgtcgagaacgacctgatcaagatggacgccggcgagacgatgtcgatcggcgac
tccggcaaggtcgaactcgagttcgtcaacgtgacccactcgatcatcgacgcgatcaac
ccagtcctgcacacgccggaaggcgccgtcgtctacggtctggacaaacggatggaccac
acgcccgtcatcggcgacccgatcgacatggagcggttccgcgaaatcggtcgcgagggc
aacggcgtactgtgttacatcgaggactgtacgaacgcgaacaagaaggggcgaaccccc
tcggaaaacgtcgcccgggaacacctccgggacgtcctctacagcatggaggactacgac
ggcggcatcgtcgccaccacattctcgagtcacatctcgcgcgtgacgtcgctggtcgag
ttcgcgaaggacatcggccgtcaaccggtcctgctgggtcgctcgatggagaagtactcg
ggcaccgcggagcgactggacttcgccgacttccccgacgacctcgggatgttcggccac
cgcaagtccgtcgaccgcacgttcaagcggatcatgaacgagggcaaggagaactacctg
ccggtcgtcaccggccaccagggcgaaccgcgcgcgatgctcacccggatggcccgcggc
gaaacgccctacgaactggacgacggcgacaaggtcgtcttctccgcccgcgtcattccg
gagccgaccaacgagggccagcgctaccaggccgagaaactgctcgggatgcagggcgcc
cgcgtctacgacgacatccacgtctcgggccacctctgtcaggagggccactacgagatg
ttagacgcccttcagccccagcacgtcatcccggcccaccaggacatgaaaggctactcc
agctacatcaacctcgctgagaatcaggggtacaagctcggacgagacctgcacgtcacg
cgcaacggcaacctcatccagctcgtcgactga
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