Haloterrigena alkaliphila: J0X25_16970
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Entry
J0X25_16970 CDS
T07793
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hakz
Haloterrigena alkaliphila
Pathway
hakz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hakz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J0X25_16970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hakz03019
]
J0X25_16970
Messenger RNA biogenesis [BR:
hakz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J0X25_16970
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GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
QSW99049
UniProt:
A0A8A2VAH5
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Position
3478781..3480130
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AA seq
449 aa
AA seq
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MEIEIATIGGYEEVGRQMTAVRMGSDIVIFDMGLNLSKVLIHDNIRTEGMHSLDLIDMGA
IPDDRVMSDLEGDVKAIVPTHGHLDHIGAISKLAHRYDAPVVATPYTIELVKGELADEQK
FDSGNDLVKMDAGETMSIGDSGKIELEFVNVTHSIIDAINPVLHTPEGAIVYGLDKRMDH
TPVIGDPIDMKRFREIGREGEGVLCYIEDCTNANEKGRTQSERVAREHLRDVLYSMEDYD
GGIVATTFSSHIARVKSLVEFADDIGRQPVLLGRSMEQYSGTAERMGFADFPDDLGMFGH
RNSVDRTFERIMNEGKEDYLPVVTGHQGEPRAMLTRMGRGETPYELDDGDKVVFSAGIIP
EPTNEGQRYQAEKLLGMQGARIYSDIHVSGHLKQEGHYEMLDALQPQHIIPAHQDMKGFS
GYVDLAGKQGYKLGRDLHVTANGNILQIV
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgaaatcgcaacaatcggcggctacgaggaagtcggccggcagatgactgcc
gtccgcatgggaagcgacatcgtcatcttcgacatggggctgaacctgtcgaaggtactg
atccacgacaacatccgcaccgaggggatgcacagcctcgatctgatcgacatgggcgcg
atccccgacgaccgcgtcatgagcgacctcgagggcgacgtgaaggccatcgtgccgacc
cacggccacctcgaccacatcggcgccatctccaagctggcccaccggtacgacgcgccg
gtggtcgcgacgccctatacgatcgaactggtcaagggcgaactcgcggacgaacagaag
ttcgacagcgggaacgacctcgtgaagatggacgccggcgagacgatgtcgatcggcgac
tccggcaagatcgaactcgagttcgtcaacgtcacgcactcgatcatcgacgcgatcaac
ccggtcctgcacacccccgagggcgcgatcgtctacggactggacaagcggatggaccac
acgcccgtcatcggcgacccgatcgacatgaagcggttccgcgagatcggtcgcgaaggt
gagggcgttctctgttacatcgaggactgtaccaacgcgaacgagaaggggcggacgcaa
tcggagcgcgtcgcccgggaacacctccgggacgtcctctacagcatggaggactacgac
ggcggcatcgtcgccaccacattctcgagtcacatcgcccgcgtgaagagtctcgtcgaa
ttcgccgacgacatcggtcgccagccggtcctgctgggtcgctcgatggagcagtactcc
ggcacggccgaacggatgggcttcgccgacttccccgacgacctcgggatgttcggccac
cgaaactccgtcgaccgcacgttcgagcggatcatgaacgagggcaaggaggattacctg
cccgtcgtcacgggccaccagggtgaaccgcgcgcgatgctcactcggatgggacggggc
gagacgccctacgaactggacgacggcgacaaagtcgtcttctccgccgggatcattccg
gagccgaccaacgagggccagcgctaccaggccgagaaactgctcggcatgcagggcgcg
cgaatctactccgacatccacgtttccggccacctcaagcaggagggccactacgagatg
ctcgacgcgctccagccccagcacatcattcccgcccaccaggacatgaagggcttctcg
ggatacgtcgacctcgccggaaagcagggatacaagctcggccgagacctccacgtgacc
gcgaacggaaacatcctccagatcgtctga
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