Halobacterium salinarum NRC-1: VNG_0133G
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Entry
VNG_0133G CDS
T00038
Symbol
rpa
Name
(GenBank) replication A related protein
KO
K07466
replication factor A1
Organism
hal
Halobacterium salinarum NRC-1
Pathway
hal03030
DNA replication
hal03420
Nucleotide excision repair
hal03430
Mismatch repair
hal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VNG_0133G (rpa)
03420 Nucleotide excision repair
VNG_0133G (rpa)
03430 Mismatch repair
VNG_0133G (rpa)
03440 Homologous recombination
VNG_0133G (rpa)
03460 Fanconi anemia pathway
VNG_0133G (rpa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hal03000
]
VNG_0133G (rpa)
03032 DNA replication proteins [BR:
hal03032
]
VNG_0133G (rpa)
03400 DNA repair and recombination proteins [BR:
hal03400
]
VNG_0133G (rpa)
Transcription factors [BR:
hal03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
VNG_0133G (rpa)
DNA replication proteins [BR:
hal03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
VNG_0133G (rpa)
DNA repair and recombination proteins [BR:
hal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
VNG_0133G (rpa)
MMR (mismatch excision repair)
VNG_0133G (rpa)
DSBR (double strand breaks repair)
HR (homologous recombination)
VNG_0133G (rpa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
REPA_OB_2
OB_Ssb-like
CDC24_OB3
SSB
POT1PC
DUF4131
DUF4454
DUF5666
Motif
Other DBs
NCBI-ProteinID:
AAG18754
UniProt:
Q9HSP9
LinkDB
All DBs
Position
110769..112193
Genome browser
AA seq
474 aa
AA seq
DB search
MGAIEDVYADLDTDVSIEEFREAVESKVEQMGGLADEETAAMLIAHEIDDGEVNGVADID
SEMDEVKFIAKVTRVGDVRTFDREDADDDDAAAEGRVVNVTVADETDDVRVSLWDEQATA
AADDLAPGDVLRIKGRPTDGYNGLEVSADEVELDADEQIDVQIQDEYDAADLSLGVSDVT
LVGEVLDTEAVRTFDRDDGSEGRVSNLVVGDETGRVRVTLWDDQADTATDLDAGAVVEIV
DGYVREREGSLELHVGDTGAVTPVPDADVSFVPDTTSIDSLEQDDTADIAGVVRSVDPTR
TFDRDDGSEGQVRNVRLQDDTGDIRVALWGEKADLDIGPGDEVAALDVEIQDGWQDDIEA
SAGWQASVIPLSDSTQDDAAAGSDGPDRGLAAFGADSDDEPAATDDAADTQTPHSDTPVE
FTGVVVQAQDPLILDDGEETMSVTTDADVTLGQEVTVRGSLDDGRLHADDVTES
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgattgaggacgtgtacgctgacctcgacaccgacgtgtctatcgaggagttc
cgggaggccgtcgagtcgaaggtcgaacagatgggggggctcgccgacgaggagacggcg
gcgatgctcatcgcccacgagatcgacgacggcgaggtgaacggcgtcgcggacatcgac
tccgagatggacgaggtgaagttcatcgcgaaagtcacccgcgtgggtgacgtccgcacg
ttcgaccgcgaggacgccgacgacgacgatgcggccgccgaggggcgggtggtgaacgtc
acggtggccgacgaaacggacgacgtccgggtctcgctgtgggacgaacaggccaccgcg
gccgccgacgacctcgcccccggggacgtgctccgcatcaaggggcggccgacggacggc
tacaacggcctggaggtcagcgccgacgaggtcgaactcgacgccgacgagcagatcgac
gtccagatccaggacgaatacgacgccgccgacctctcgttgggggtttcggacgtgacc
ctcgtcggggaggtcctggacaccgaggccgtccggacgttcgaccgtgacgacggcagc
gagggtcgtgtgtcgaatctcgtggtgggcgacgagaccggccgagtgcgagtgaccctg
tgggacgaccaggccgacaccgcgacggatctcgacgccggggccgtcgtcgagatcgtg
gacggatacgtccgcgagcgggagggcagcctcgaactccacgtcggggacaccggcgcg
gtcacgccggtcccggacgccgacgtgtcgttcgttccggacaccacgtccatcgacagc
ctcgaacaggacgacaccgcggacatcgcgggcgtcgttcggtcggtcgaccccacgcgc
acgttcgaccgcgacgacggcagcgagggccaggtacgcaacgtccgcctgcaggacgac
accggcgacattcgggttgcgttgtggggcgagaaggcggatctggacatcggcccgggt
gacgaagtggcggccctcgacgtggagatccaggacggctggcaggacgacatcgaggcg
tcggccggctggcaggcgtcggtgatcccgctgtcggacagcacccaggacgacgccgcc
gccggcagcgacggccccgaccgcgggctggcggcgttcggtgccgacagcgacgacgag
cccgccgccaccgacgacgcggccgacacacagactccacacagcgacacgcccgtggag
ttcaccggcgtcgtcgtgcaggcccaggacccgctgattctggacgacggcgaggagacg
atgagtgtcaccaccgacgccgacgtgactctcggccaggaggtcaccgtccgcggctcg
ctcgacgacggccggctacacgccgacgacgtcacggagtcgtga
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