Halobacterium salinarum NRC-1: VNG_0349G
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Entry
VNG_0349G CDS
T00038
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hal
Halobacterium salinarum NRC-1
Brite
KEGG Orthology (KO) [BR:
hal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hal03032
]
VNG_0349G (topA)
03400 DNA repair and recombination proteins [BR:
hal03400
]
VNG_0349G (topA)
Enzymes [BR:
hal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
VNG_0349G (topA)
DNA replication proteins [BR:
hal03032
]
Prokaryotic type
DNA Topoisomerases
VNG_0349G (topA)
DNA repair and recombination proteins [BR:
hal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VNG_0349G (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
HHH_5
HHH
DUF4332
Cdd1
HypA
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AAG18918
UniProt:
Q9HS90
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All DBs
Position
275992..277983
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AA seq
663 aa
AA seq
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MWGASLTRFLSLSAGQMGEDFISVGRVQSPTLKLIVDKEREIEAFDPDDYWELFADLRKD
QTTFEAQYFYEDPADGTEAERVWNEGDADAAFDALRQAGEAVVDSVSRRTRTDDPPAPFN
TTQFIRAAGSLGYSAGRAMSIAEDLYTAGYITYPRTDNTVYPDDLDERDLLEAFQQTVFG
DDADSLLDQDRLSPTSGDEETTDHPPIHPTTDFPDRNQLSEDEWAVYELVVRRFFATVAA
PAEWAHLRVTADADGESLKANGKRLVEAGYHAVYPYYDSSENHVPPVEEGDTLAITDARL
DAKQTQPPRRYGQSRLIETMESMDIGTKSTRHNTIEKLYDRGYIENDPPRPTTLAEAVVE
AAEDYADVVVSEEMTSQLEADMTAIADGETTLDDVTTESREMLDRVFDELTASRAEIGDH
LRTSLKADKSLGPCPECGDTLLLRQSRTGSHFVGCDGYPECQFTLPLPSTGDPLVMDAVC
EDHDLHDVKMLAGRNTFVHGCPLCAAEAADESEDRLIGPCPDCGEPHGGELAIKQLQSGS
RLVGCDRYPDCEYSLPLPRRGDIEVTETYCDEHALPELVVHDGEDDDPWELGCPICNYEE
YQARQRQQGLEALDGVGPKTAAKLESAGVEDVGALADADPEGIADAVSGVSADTIREWQA
QAD
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtggggggcgtcgctgacccggttcctgtcgctgtcggcgggccagatgggcgaggac
ttcatctccgtgggccgggtgcagtcgcccacgctgaagctcatcgtggacaaggaacgc
gagatcgaggcgttcgatcccgacgactactgggagctgttcgcggacctccggaaagac
cagaccaccttcgaggcgcagtacttctacgaggaccccgcggacggcaccgaggccgag
cgcgtctggaacgagggcgacgccgacgccgcgttcgacgccctccggcaggccggcgag
gcggtcgtcgactccgtgtcccgccggactcgcaccgacgatccgcccgcgccgttcaat
accacgcagttcatccgcgccgcgggctcgcttggctactcggcgggccgcgcgatgagc
atcgccgaggacctctacaccgcgggctacatcacgtacccccgcaccgacaacaccgtc
taccccgacgacctcgacgagcgcgacctgctggaagccttccagcagacggtgttcggg
gacgacgccgattcgctgctcgaccaggaccgcctctcgccgaccagcggcgacgaggag
accaccgaccacccgccgatccatccgacgacggacttccccgaccgcaatcagctctcc
gaggacgaatgggcggtctacgaactcgtcgtgcggcggttcttcgcgacggtcgccgcg
cccgccgagtgggcgcatctccgcgtcaccgcggacgccgacggcgagtccctgaaggcc
aacgggaaacgcctcgtcgaggcgggctaccacgcggtctacccgtactacgacagctcc
gagaaccacgtgccgcccgtcgaggagggcgacacgctcgccatcaccgacgcccgactg
gacgccaaacagacccagccaccgcgccggtacgggcagagccggctcatcgagacgatg
gagtcgatggacatcgggacgaagtcgacgcggcacaacaccatcgagaagctttacgac
cgcggctacatcgagaacgaccccccgcggccgacgacgctcgcggaggcggtcgtggag
gccgccgaggactacgccgatgtcgtggtcagcgaggagatgaccagccaactggaggcg
gacatgaccgccatcgccgacggcgaaacgacactcgacgacgtgaccacggagtcccgg
gagatgctcgaccgggtgttcgacgaactcaccgcttcccgggctgagatcggcgaccac
ctccgcacgtcactgaaagccgacaaatcactcggcccctgtccggagtgtggcgacacg
ctgttgctccggcagtcccgcaccggatcgcatttcgtgggctgcgatggctacccggag
tgccagttcacactcccgctgccgtcgaccggcgacccactcgtcatggacgccgtctgt
gaggaccacgacctccacgacgtgaagatgctcgccggccggaacacgttcgtccacggc
tgcccgctgtgcgcggccgaggcggccgacgagtccgaggaccgactcatcgggccgtgt
ccggactgcggcgaaccccacggcggcgaactcgccatcaagcagctccagtcgggcagc
cggctcgtcggctgcgaccgctatccggactgcgagtactcgctgccgctgccccgacgc
ggcgacatcgaggtcacggagacgtactgcgacgagcacgccctccccgaactcgtcgtc
cacgacggcgaggacgacgacccctgggagctcggctgccccatctgcaactacgaagag
taccaggcccgccagcgccagcagggactcgaagcactggacggcgtcggtccgaaaacc
gctgcaaaactcgaatcggccggggtcgaggacgtcggcgcgctcgccgacgccgaccca
gaggggatcgccgacgcggtctcgggcgtcagtgccgacacgatccgagagtggcaagcg
caggcggactga
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