Halobacterium salinarum NRC-1: VNG_6351G
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Entry
VNG_6351G CDS
T00038
Symbol
tfbC
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
hal
Halobacterium salinarum NRC-1
Pathway
hal03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hal00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
VNG_6351G (tfbC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hal03021
]
VNG_6351G (tfbC)
Transcription machinery [BR:
hal03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
VNG_6351G (tfbC)
Prokaryotic type
Archaeal type
TFB
VNG_6351G (tfbC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
A2L_zn_ribbon
Cyclin_N
Cyclin_C
Sigma70_r4
Zn_Ribbon_YjdM
Lar_restr_allev
Zn_ribbon_3
DUF7093
DZR
DZR_2
Ribosomal_S27e
Motif
Other DBs
NCBI-ProteinID:
AAG20975
UniProt:
Q9HHK5
A0A510NB97
LinkDB
All DBs
Position
pNRC200:complement(282126..283079)
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AA seq
317 aa
AA seq
DB search
MERATREREKEQREQAQTNDEAQQCPECNSANVITDQSERVCEDCGLVLEDDQIDHGPEW
RAFNSSERDQKSRVGAPTTKTMHDKGLTTQIDWKDKDAYGRSLDAKKRNQMNRLRKWQER
IRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATAC
LYAACRQEGIPRTLEEVTEVARIDQKEIGRTYRYVAQELSLEIQPTDPKEYLPRFASDLE
LSEEVIAKAREIIDTSAEQGLLSGKSPSGFAAAAIYAASLLCNEKKTQREVANVANVTEV
TIRNRYQEQIEAMGFGV
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggaacgggcgactcgggaacgtgaaaaggaacagcgtgagcaagcacaaacgaacgac
gaggcacagcagtgcccggagtgcaactcagccaacgtgatcaccgatcagagcgaacga
gtctgtgaggactgcgggctcgttcttgaggacgaccaaattgatcacggcccggagtgg
cgggcgttcaactcctcagagcgcgaccagaaatcacgcgtgggcgcgccgacgacgaaa
acgatgcacgataaggggctgacgacccagatagactggaaggacaaggatgcctacggt
cgctcacttgacgcgaagaaacgaaaccagatgaatcgcctccggaaatggcaggagcgc
atccggacgaaggacgcgggtgaacgcaacctccagttcgcgctctctgagatcgatcgg
atggcatccgcgcttggcgtcccacgtagtgttcgcgaggtcgcatcggtcatctatcgg
cgcgcgctcaaagaggacctcatccgtgggcgctcaatcgagggcgtcgcgactgcctgc
ctctacgccgcctgccgccaagagggcatcccgcgaaccctcgaagaagtgacggaagtc
gcccgcatcgaccagaaggagatcggacggacgtatcgctatgtcgcccaagaactctcc
ctcgaaattcagccaaccgaccccaaggaatacctcccccgcttcgcgagcgacctcgaa
ctttctgaagaagtcatcgcaaaggcccgcgaaatcatcgacacctccgccgaacaagga
ctactctctgggaaatcaccatccggatttgccgccgccgccatctacgcggcaagcctc
ctctgcaacgagaagaaaacccagcgcgaagtcgccaacgtcgcaaacgtcaccgaagtc
accatccgcaaccgctaccaagaacaaatcgaagcgatgggcttcggagtataa
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