Halobacterium salinarum NRC-1: VNG_6438G
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Entry
VNG_6438G CDS
T00038
Symbol
tbpF
Name
(GenBank) transcription initiation factor IID
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
hal
Halobacterium salinarum NRC-1
Pathway
hal03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hal00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
VNG_6438G (tbpF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hal03000
]
VNG_6438G (tbpF)
03021 Transcription machinery [BR:
hal03021
]
VNG_6438G (tbpF)
Transcription factors [BR:
hal03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
VNG_6438G (tbpF)
Transcription machinery [BR:
hal03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
VNG_6438G (tbpF)
RNA polymerase III system
TFIIIB
VNG_6438G (tbpF)
RNA polymerase I system
SL1/TIF-1B
VNG_6438G (tbpF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TBP
Motif
Other DBs
NCBI-ProteinID:
AAG21034
UniProt:
Q9HHE9
A0A510NBD5
LinkDB
All DBs
Position
pNRC200:329788..330348
Genome browser
AA seq
186 aa
AA seq
DB search
MSSLADTIHIENVVASSDLGQELALDQLATDLDGAEYNPEDFPGVVYRLQEPKSATLIFR
SGKVVCTGAKSVDAVHDALEIVFDDLRELGIDVDSTPPVKVQNIVSSASLEQSLNLNAIA
IGLGLEQIEYEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGAAESADAQHALAHVNDRLT
ELGLLE
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtctggcggacacgatccacatcgagaacgttgttgcatccagtgatctcggc
caggaactcgccctcgaccagctcgcaacggatctcgatggcgctgagtacaacccagag
gacttcccgggggttgtctaccggcttcaggagccgaagtcagccacgctgatcttccgg
tcggggaaagttgtctgcaccggcgcgaagagcgtcgatgctgttcacgatgctctcgag
atcgttttcgatgacctccgcgagttaggcatcgacgtcgacagtactccaccggtcaag
gtacagaacatcgtctctagtgccagccttgagcagtcgctgaatttgaacgcaatcgca
atcgggctgggcttagagcagatcgaatacgaacccgaacagttccccgggctcgtctat
cgtctcgacgaccccgatgtcgtcgttttgctgttcgggagtgggaaactcgtgattact
ggcgcagcggaatctgcggatgcccagcacgcgttggcacacgtcaacgatcggctcacg
gaactcggcctgcttgagtga
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