Halorhabdus sp. CBA1104: Hrd1104_01305
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Entry
Hrd1104_01305 CDS
T06289
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
hala
Halorhabdus sp. CBA1104
Pathway
hala03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hala00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hrd1104_01305 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hala03400
]
Hrd1104_01305 (uvrB)
DNA repair and recombination proteins [BR:
hala03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hrd1104_01305 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Hrd1104_01305 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
UVR
ResIII
DEAD
UB2H
DUF87
AAA_22
DUF8048
AAA_30
HEM4
Cofilin_ADF
Motif
Other DBs
NCBI-ProteinID:
QGN06060
LinkDB
All DBs
Position
complement(234055..236112)
Genome browser
AA seq
685 aa
AA seq
DB search
MSDTGGPLSPDRPDAETTFRVEAPFDPAGDQPDAIAQLADGFRQGMDEQTLLGVTGSGKT
NTVSWVVEEIQQPTLVIAHNKTLAAQLYEEFRELFPDNAVEYFVSYYDYYQPEAYVEQTD
KYIEKDASINDEIDRLRHSATRSLLTRDDVIVVASVSAIYGLGDPRNYIDMSLHLEVGQE
IDRDELLARLVDLNYERNDVEFTHGTFRVRGDTVEIYPMYGRYALRVEFWGEEIDRISKL
DPLESELKSEEPAALIHPAEHYSIPEQRLEDAIAEIEELLDQRVSYFERQGDLVAAQRIE
ERTTFDLEMLEETGYCSGIENYSVHLSDRESGQAPYTLLDYFPDDFLTVVDESHQTIPQV
RGQYAGDKSRKDSLVENGFRLPTAYDNRPLTFEEFEEKTDQTLYVSATPGEYEREQSAQV
VEQIVRPTYLVDPEIEVSSAQSQVEDLLDRLDSLPDDERALVTTLTKRMAEDLTEYLQEA
GVAVEYMHDETDTLERHELVRGLRAGEFDVLVGINLLREGLDIPEVSLVGILDADQAGFL
RSETTLVQTMGRAARNVNGNVVLYADDPSDAMEAAIEETKRRRRIQREYNAEHGHEPATI
EKAIGETNLPGSKTDTGESATADPNDEEDAARLVEELQQRMEAAADNLEFELAADIRDRI
RELREEYDLDGPEDPGAEGVPAPER
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaccggcggccctctctcgcccgaccgccccgatgccgagacgacgttccgc
gtcgaggccccgttcgatcccgcaggcgatcagcccgacgccatcgcacaactcgccgac
gggttccggcagggcatggacgaacagaccctcctcggtgtcactggctctggcaagacc
aacaccgtctcgtgggtcgtcgaagagatccagcagccgacgctggtcatcgcccacaac
aagacgctggcggcccaactctacgaagagtttcgggagctctttccggacaacgccgtc
gagtacttcgtctcctactacgattactaccagcccgaggcctacgtcgaacagaccgac
aagtacatcgagaaagacgcctcgatcaacgacgaaatcgatcggctgcgccactcggcg
acccgctcgttgctaacccgtgacgatgtgatcgtcgtcgcctcggtctcggccatctac
ggcctcggtgaccccagaaactacatcgacatgtcgctgcacctcgaagtcggccaggag
atcgaccgcgacgagttactggcccggctcgtcgacctgaactacgagcgcaacgacgtc
gagtttacccacggcacgttccgcgtccgtggcgacaccgtcgagatctacccgatgtac
ggccggtatgcccttcgcgtcgagttctggggcgaggagatcgaccgcatctcgaagctc
gatccactggaaagcgagctcaaaagcgaggaaccggcggccctgatccaccccgccgaa
cactactcgatccccgagcagcgactggaagacgcaatcgcggagatcgaggagctgctg
gaccaacgggtcagttacttcgagcgccagggcgacctggtggccgcccagcgcatcgag
gagcggacgaccttcgatctggagatgctcgaagagaccggctactgttcgggcatcgag
aactactccgtccacctctcggatcgggaatcaggccaagccccctacaccctactggat
tacttccccgatgacttcctgacggtcgtcgacgagtcccaccagacgatcccccaagtt
cggggccagtacgcgggcgacaaatcccgcaaggactccctggtcgagaacggcttccgc
ctgccgacggcctacgacaatcgcccgctgaccttcgaggaattcgaggaaaagaccgac
caaacgctgtacgtgagcgcgacgcctggcgagtacgaacgcgagcaaagcgcgcaggtc
gtcgagcagatcgtccgtccgacctatctcgtcgaccccgaaatcgaagtcagctccgcc
cagtcgcaggtcgaggacctgctggatcgtctcgacagcctcccggacgacgagcgggcc
ttggtcacgacgctgaccaaacggatggccgaagatctcaccgagtatctccaagaggca
ggcgtcgccgtcgagtacatgcacgacgagaccgacacgctcgaacggcacgaactggtc
cgggggctgcgggccggggagttcgacgtcctcgtcgggatcaacctcctccgggagggc
ctggacattccggaggtgagcctggtgggcattctggacgccgaccaggcggggttcctg
cgcagcgagacgacgttggtccagacgatgggccgggccgcccggaacgtcaacgggaac
gtcgtgctgtacgccgacgatccgagcgacgccatggaggcagccatcgaggagaccaag
cgccggcgacggattcaacgcgagtacaacgcagaacacggccacgagccggcgaccatc
gagaaggccatcggcgagacgaatctacccgggagcaagacagacactggcgagtcggca
accgccgaccccaacgacgaggaagacgccgcgcggctggtcgaagagctacaacagcgc
atggaggcggccgccgacaacctggagttcgaactcgcggccgacatccgcgatcgcatc
cgggagttgcgcgaggagtacgacctcgacggccccgaggaccctggcgcggagggcgta
ccagcccccgagcggtga
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