Halorhabdus sp. CBA1104: Hrd1104_05890
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Entry
Hrd1104_05890 CDS
T06289
Name
(GenBank) DNA double-strand break repair Rad50 ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
hala
Halorhabdus sp. CBA1104
Brite
KEGG Orthology (KO) [BR:
hala00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hala03400
]
Hrd1104_05890
DNA repair and recombination proteins [BR:
hala03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Hrd1104_05890
Archaeal homologous recombinant proteins
Hrd1104_05890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
SMC_N
AAA_21
AAA_27
AAA_29
AAA_13
ABC_ATPase
SbcC_Walker_B
MukB
ABC_tran
FapA
ZnF_RZ-type
EXOC6_Sec15_N
Motif
Other DBs
NCBI-ProteinID:
QGN06870
UniProt:
A0A650A3U7
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All DBs
Position
1136379..1139051
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AA seq
890 aa
AA seq
DB search
MRFERIHLENFKCYADADLRLDRGVTVIHGVNGSGKSSLLEAAFFALYGARALDRTLEDL
VTIGAEEATIELWFAHGGESYHIKRRLRVRDDRATTVECVLDEPDGTVEGARDVRERVAT
LLRMDHAAFVNCAYVRQGEVNKLINATPRERQDMIDDLLQLGRLEEYRQRASDARVGVGR
VLQDKDGSLSQLAEQIDEKEAKDLHEQLNATETDLTSVSEELENYEQQRETARETLADAE
AVLEEGEQRREDLQDVTAEIDDLTETVETTASKREQLQTEIREHRERRDELQETIESAVE
ATELAGDADRETLENHREALRSQDEDLRDDIESHRLAAQRHRDEAESHREEADECGTRAA
EQRERADELESDLEDTREDLADRRETLSDIDDQIAAIEVTFEDAPVARGEADTFRKEVQA
NLDDIDDDLMSVRAEIERLEATIEEAEELLEAGKCPECGQSIEGAPRVDTLEDDRERRQE
LQSEREALEDERATLEDELERANELHDRESEYDRLNEKRETLAELIGDRETTIEETNERI
ETLRDEAAQLDEQAEKQREQAEEATAAAEQARQAIAECNERRAALSDRIDTIEEILEWLD
ERDDVEDAIEQRRERREQLAEMNDERRERLTALRERRAELEAAIDEERLEEAREDKDRAE
TYLEEVSEEIERLESRRDDLQAKKGAIENEIEELQSLRDRREDLAATVDRLDTLYEEAEQ
LQEMYGQLRADLRQRNVETLERMLNDTFDLVYRNDSYARIELDEDYHLTIYQKDGQALDP
EQLSGGERALFNLSLRAAIYRLLAEGIEGTAPTPPLILDEPTVFLDSGHVSQLLELVAYM
REEIGVEQIVVVSHDEELVDAADDLVHVSKDATTNRSTVSRREATALPMD
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgaggttcgagcggatccatctggagaacttcaagtgctacgccgacgccgatctgcga
ctggatcgcggcgtgacggtcattcacggcgtcaacggcagcggaaagtcatcgttgctc
gaagccgcctttttcgccctgtacggggcgcgagcgctcgaccggacgctcgaagacctg
gtgacgatcggggccgaagaagcgacgatcgagctgtggttcgcccacggcggcgagtcc
taccacatcaagcgacgcctccgggtccgggacgatcgggcgacgacagtcgaatgtgtc
ctcgacgaaccggacgggacggtcgaaggtgcacgcgacgtccgcgagcgggtcgcgacg
ctgttgcggatggatcacgccgcgttcgtcaactgtgcgtacgtccgtcagggcgaggtc
aacaagctcatcaacgcgacgccgagggaacgccaggacatgatcgacgacctcctccag
ttgggtcgtctggaagagtaccgccaacgggccagtgacgcgcgcgtcggggtcggccgc
gtcctgcaggacaaggacggctcgctctcacagcttgcagaacaaatcgacgaaaaggaa
gccaaagacctccacgagcagctcaacgccaccgagacggaccttacgtccgtcagcgag
gaactcgaaaactacgaacagcaacgcgaaactgcaagggagacactcgctgacgccgaa
gcggtcttagaggaaggcgaacagcgacgcgaggacctccaggacgtcacagccgagatc
gacgacctgaccgagacagtcgaaacgacagcatcgaaacgcgagcagctacagacggag
atccgcgagcaccgcgagcgccgcgatgagttacaggaaaccatcgagtccgcggtcgag
gcgacggaactggctggggatgccgaccgcgagacgctggaaaatcatcgcgaagcactg
cgatcacaggacgaggacctccgcgacgacatcgagagtcacagactcgctgcccagcgc
caccgcgacgaggccgaatcacaccgcgaagaagccgacgagtgcgggacgcgggccgcc
gagcaacgcgaacgcgccgacgaactcgaatccgacctcgaagacacacgggaggatctg
gccgaccgacgcgagacactttcggacatcgacgaccagatcgctgcgatcgaggtgacg
ttcgaggacgcgccggtcgcccgcggcgaggcagacacgttccgcaaagaggtccaggcg
aacctagacgacatcgacgacgacctcatgtcggttcgtgcagaaatcgagcgcctggaa
gcgacgattgaggaggcagaagaactgcttgaggctggcaagtgcccggaatgtggccag
tcaatcgagggcgcgccgcgtgtcgacaccctcgaagacgatcgcgagcgacgccaagag
ctgcaatccgaacgcgaagccctcgaagacgagcgggcgacgctcgaagacgagctcgaa
cgcgccaacgagctccacgatcgggagagcgagtacgaccgcctcaacgagaaacgggag
acactcgccgaattgatcggcgatcgggagacgacgatcgaggaaacgaacgagcgaatc
gagacgcttcgggacgaagccgcccaactggacgaacaggccgaaaaacagcgtgaacag
gccgaggaggcaacagctgccgccgagcaagcccggcaagcgatcgcggagtgcaacgag
cgccgcgcggcgctgtcggatcggatcgacaccatcgaggagattttggagtggctggac
gaacgcgacgacgtcgaggacgcgatcgagcaacgacgggagcgacgcgagcaactggcc
gagatgaacgacgagcgacgcgagcgactgacggcgctccgggagcgacgcgccgaactc
gaagcagcgatcgacgaggagcgcctcgaagaagcccgggaagacaaggaccgagcggag
acgtatctcgaagaagtcagcgaggaaatcgagcgcctcgaaagccgccgcgacgacctg
caggcaaagaagggtgccatcgaaaacgagatcgaggagttacagtcactcagggaccgt
cgcgaggacctcgccgcgacggtcgaccggctcgacaccctctacgaggaggccgagcag
ctacaggagatgtacggccaactccgggcggacctccggcagcgaaacgtcgaaacgtta
gagcggatgctcaacgacacgttcgatctcgtttaccggaacgactcctacgctcggatc
gagctcgacgaagactaccacctgacgatctaccagaaagacggacaggccctcgatccc
gaacagctctcgggcggggagcgagcactgttcaacctgagtctccgggccgcgatctat
cggctcttagccgaagggatcgaggggacggcaccgaccccgccactaattcttgacgag
ccgaccgtcttcctggactcggggcacgtctcacaactgctcgaactcgtcgcgtacatg
cgcgaggaaatcggtgtcgaacagatcgtcgtcgtcagccacgacgaggaactcgtggat
gcggccgacgacctcgtccacgtcagcaaggacgccacgaccaaccgctcgactgtgagc
cgccgcgaggcgactgccctgccgatggattga
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