Halorhabdus sp. CBA1104: Hrd1104_08450
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Entry
Hrd1104_08450 CDS
T06289
Name
(GenBank) DHH family phosphoesterase
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hala
Halorhabdus sp. CBA1104
Pathway
hala03410
Base excision repair
hala03430
Mismatch repair
hala03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hala00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Hrd1104_08450
03430 Mismatch repair
Hrd1104_08450
03440 Homologous recombination
Hrd1104_08450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hala03400
]
Hrd1104_08450
DNA repair and recombination proteins [BR:
hala03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Hrd1104_08450
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Hrd1104_08450
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Hrd1104_08450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Tk-SP_N-pro
SAM_MT
Motif
Other DBs
NCBI-ProteinID:
QGN07332
UniProt:
A0A650A4J6
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All DBs
Position
complement(1659112..1660518)
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AA seq
468 aa
AA seq
DB search
MGPVPELADRARSCADRLRQAESVLLASHIDADGLTSAAIAASALERAEIPTTVVFKNQL
DDEEIASIAAREEETVLFTDFGSGQLDAISDHESRGDFEPIVVDHHQPADAETRYHLNPL
LEGIDGASELSGAGACYLLARALEDDTDNRDLAGLAVVGAVGDMQASGGELVGTNRAIVD
EGMAAGVLEERTDLALYGTQTRPLPKLLEYADRPRIPGVTGDQAGAIEFLESVGIQLKAD
GEWRRWVDLSMDERQSVVSALLKRGVNRGVSADSIDGLVGTTYTLAEEQPGTELRDASEF
STLLNATARYERADVGLAVCLGDRGDALARARRLLANHRRNLSEGLEWVRQQGVTLESNL
QWFDAGDAIRETIVGIVAGMAFGTPGVKRDRPIVAFAEKSDTERKVSARGTPALVTQGLD
LSDAIGAASRAVGGDGGGHDVAAGATIPTDQRMAFLDRLDAAIGEQIA
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgggtcctgtccccgaactggccgatcgcgctcgctcgtgtgccgaccgactccgccag
gcggagtctgtcctgttggcatctcatatcgacgccgacgggctgaccagtgccgcgatc
gccgccagcgccctcgaacgggctgagattccgacgaccgtcgtcttcaagaaccagctg
gacgacgaggagatcgcttcgatcgccgcccgtgaggaagagacagtgctgtttacggac
ttcggaagcgggcagctcgacgcgatcagtgatcacgagagccgtggagacttcgagccg
atcgttgtcgatcaccaccaaccggccgatgccgagacgcgctaccatctcaacccgctt
ttggaagggatcgacggcgcgtccgaactttccggggctggggcgtgttacctgctcgcg
cgtgcgctggaagacgacacggacaaccgggacctcgccgggctcgcggtcgtgggggca
gtcggtgacatgcaggccagtggtggcgaactggtgggcacaaaccgggcgatcgtcgac
gaaggcatggccgcgggcgtcctcgaagagcgaaccgacctagcactgtacgggacacaa
acccggccactcccgaaactgctcgaatacgcagatcgaccacgcatccctggggtgaca
ggcgaccaggcgggtgcaatcgagtttttagagtcggtcgggatccaactgaaggccgac
ggcgagtggcgacggtgggtcgacctctcgatggacgaacgccagtcggtcgttagcgcc
ctgctaaagcgtggtgtcaaccgaggtgtctcggcggactcgattgatggcctcgtaggg
acgacatacacgcttgccgaggaacaaccggggacggagcttcgggacgcaagtgaattc
tcgacactgctgaacgcgaccgcacgctacgaacgcgccgacgtcggactcgctgtctgt
cttggtgatcgtggggatgctctcgcccgggcccgccgtctgctcgctaaccatcgtcgc
aacctctctgaagggctcgaatgggttcgccaacagggtgtgactctcgaatccaacctc
cagtggttcgacgccggtgacgcaatccgggagacgatcgtggggatcgtcgccggaatg
gcgtttgggacgcccggcgtcaagcgcgatcggcccattgtagctttcgccgagaaatcc
gataccgaacggaaggtgtccgctcgggggacgcctgcactcgttactcaaggattggat
ttgtccgacgcgatcggggcggcgagtcgagccgtcggcggtgacggtggcggacacgac
gtcgctgccggggcgacgattccaacggaccaacgcatggcctttctcgaccggctggac
gcagcgatcggcgagcagatcgcgtaa
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