Halorhabdus sp. CBA1104: Hrd1104_08875
Help
Entry
Hrd1104_08875 CDS
T06289
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
hala
Halorhabdus sp. CBA1104
Brite
KEGG Orthology (KO) [BR:
hala00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hala03016
]
Hrd1104_08875 (thpR)
Enzymes [BR:
hala01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Hrd1104_08875 (thpR)
Transfer RNA biogenesis [BR:
hala03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Hrd1104_08875 (thpR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
HVSL
Phage_TAC_11
Motif
Other DBs
NCBI-ProteinID:
QGN07408
UniProt:
A0A650A620
LinkDB
All DBs
Position
1745027..1745605
Genome browser
AA seq
192 aa
AA seq
DB search
MSKRLFVSVDLDGLGEAVAPVQEHFEAVSGLNVVDPHQAHVTLKFLGDTDPDQVPELTDE
LAAAVDESGVEPFETELGGLGAFPSTDYIRVVWLGVREGGEQLTRLHEAIEERTVAMGFD
PEEHDFTPHVTLARVNRLGVKWFETPEASRHHERAKLSRTTPRLVSGLPLYPRNAEGVKV
PFAFSVPDLRAS
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagcgactgttcgtcagcgtcgacctcgacggcctcggcgaggcggtcgcccca
gtccaagaacacttcgaggctgtgtcgggcctgaacgtcgtcgacccacaccaggcccac
gtcacactgaaattcctcggcgacactgatcccgaccaagtgcccgaactcaccgacgaa
ctcgcggccgcggtcgatgaaagcggcgtcgagccattcgagaccgagctcggcggcctg
ggcgcgttcccgagcacggattacatcagggtcgtctggctgggtgtccgcgaagggggc
gagcaactcacccgactgcacgaggcaatcgaggaacgtacagttgcgatggggttcgat
cccgaagagcacgacttcaccccacacgtcacgctggcccgcgtcaaccgcctcggggtc
aagtggttcgagacgccggaggcgtctcgtcatcacgagagagcgaagctctctcgaacg
accccgaggcttgtcagtggactcccactctatccgcgtaatgcggaaggcgtgaaagtg
ccgttcgcgttcagcgtccctgacttgagggccagttga
DBGET
integrated database retrieval system
