Halorhabdus sp. CBA1104: Hrd1104_09475
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Entry
Hrd1104_09475 CDS
T06289
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
hala
Halorhabdus sp. CBA1104
Pathway
hala03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hala00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Hrd1104_09475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hala03021
]
Hrd1104_09475
Transcription machinery [BR:
hala03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
Hrd1104_09475
Prokaryotic type
Archaeal type
TFB
Hrd1104_09475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Anti-TRAP
Zn_ribbon_tTFIIB
DZR_2
HTH_Tnp_ISL3
A2L_zn_ribbon
Zn_ribbon_LysW
Trm112p
Motif
Other DBs
NCBI-ProteinID:
QGN08237
LinkDB
All DBs
Position
complement(1855007..1855978)
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AA seq
323 aa
AA seq
DB search
MSDTNTRTRLDRSSTVDEQEDESTEADCPECSGKLISDTERGETVCTDCGLVVEEDEIDP
GPEWRAFDAKEKDEKSRVGAPTTNMMHDKGLSTNIDWRDKDAYGNSLGSRQREKMQRLRK
WNERFRTRDSKERNLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGV
STASVYAAARQAGVPRSLDELTEVSRVEKDEIARTYRYVVRELGLEVKPADPESYVPRFT
SDLELSEEAERRARELLQNAKEEGVHSGKSPVGLAAAAIYAASLLTNEKTTQAAVSEVAD
ISEVTIRNRYHELLEAEQSIPAA
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacaaacactcgcacgcgactcgaccgatcctcgacagtggacgaacaggaa
gacgaatcgaccgaggcagactgtcccgaatgtagcgggaaactcatctccgatacggaa
cgcggggagactgtctgtacggactgtggactggtcgtcgaggaagacgagatcgacccc
ggcccggagtggcgcgccttcgacgccaaggagaaagacgagaagtcccgcgtcggtgcg
ccgacgacgaacatgatgcacgataagggcctctcgaccaacatcgactggcgtgacaaa
gacgcctacggcaattcgcttgggtctcgccagcgtgagaagatgcagcgcctccggaag
tggaacgagcgctttcgcacccgcgactccaaagaacgcaacctcaagcaggctctcggt
gagatcgaccggatggcgagcgcactcggcctccccgagaacgtccgcgaaaccgcttct
gtcatctatcgccgggccttggacgaagacctcctgcccggtcgctccatcgaaggtgtt
tcgacggcatcggtgtacgctgctgcccgccaggccggtgttccgcggagtctcgacgaa
ctgacggaagtgtctcgcgtcgagaaagacgagatcgcccggacgtatcgatacgtcgtc
cgtgaactcggcctggaggtcaagccggccgatcccgagagctacgttccccggtttacc
tcggacctcgaactgagtgaggaagccgaacgccgcgcccgtgaactcctccagaacgcc
aaagaagagggcgtccactccgggaaaagtcccgtcggactggccgcggccgcgatctac
gccgcctcgctgttgaccaacgagaagacgacccaggctgcggtctcggaagtcgcggat
atctccgaggtcacgatccgcaaccgctatcacgaactgctcgaagccgagcagtcgatc
cccgcggcctga
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