Halorhabdus sp. CBA1104: Hrd1104_11085
Help
Entry
Hrd1104_11085 CDS
T06289
Symbol
endA
Name
(GenBank) tRNA-intron lyase
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
hala
Halorhabdus sp. CBA1104
Brite
KEGG Orthology (KO) [BR:
hala00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hala03016
]
Hrd1104_11085 (endA)
Enzymes [BR:
hala01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Hrd1104_11085 (endA)
Transfer RNA biogenesis [BR:
hala03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Hrd1104_11085 (endA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-ProteinID:
QGN07789
LinkDB
All DBs
Position
2190667..2191707
Genome browser
AA seq
346 aa
AA seq
DB search
MELVLESGVVRGDGRAREQFYDSRGYGRPVAEGLELAPVEAAHLLYRSDIESVRDAESGE
SLDFRALLSSAAVSEIDVLVYKDLRDRGFYLSPARDGWVDDPSGADFVVYPRGNGPWDEE
VAYRVRAESERTAVSAASLGESVLAVVDEESAITYLETDYPTVEGASGIDLPTDVEADLL
GDRVLVWDPPSRLYHEGFYGQPLDDDAGKPLQLSLVEAAALAGRGVLEVTGGEDAIVECG
REVEGERFDRRLAVYRALRDRGVVPKTGYKFGADFRTYADVDTVDSLGHSELLVRVLPAD
HAFSPRDLALDVRLAHGVRKRMVFALVSSSDSKTDIEWLEVGRLTP
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atggaactggtcctcgaaagcggtgtcgtccgtggcgatggcagggctcgcgagcagttt
tacgactcgcgagggtacggccggccggtcgcggagggcctcgaactggcccccgtcgag
gcggcccacctgctgtatcgaagcgacatcgagtccgttcgagacgcggaaagcggtgaa
tcgctggacttccgggcactgctgtcctcggctgccgtctccgagatcgacgtcctcgtg
tataaggacttgcgggaccggggcttttacctctcgccggcacgggacggctgggtcgac
gatccttcgggggcggatttcgtcgtctatcctcgtgggaacggcccctgggacgaggag
gtggcctaccgcgtgcgggccgaaagtgagcggacagccgtttcggcggcctcgctcggc
gagagcgtcctggcggtcgtcgacgaggagtcggcgatcacgtatctcgaaaccgattac
ccgactgtcgagggcgcttccgggatcgatctaccgaccgacgtcgaggccgacctgctg
ggcgatcgggtgctggtatgggaccccccgtcgagactctaccacgaagggttctacgga
cagccgctggacgacgatgcgggcaaaccgctccagctctcactggtcgaggccgcggcc
ctggccgggcgtggcgtgctcgaggtcaccggtggcgaggacgcgatcgtcgagtgtggc
cgtgaggtcgaaggcgagcgattcgaccgccggcttgcagtctaccgcgccctccgggac
cgtggcgtcgtgcccaagacggggtacaagttcggtgcggacttccggacctacgctgac
gtcgacaccgtcgattcactgggccactccgagttgctcgtccgagtgctgcccgccgac
cacgcgttttcgccgcgtgacctcgcgctcgacgtacgcctcgcacacggcgtccgcaaa
cggatggtgttcgcactggtgagtagttccgacagcaagacggacatcgagtggctcgaa
gtcggccgactgacgccgtga
DBGET
integrated database retrieval system
