Halorhabdus sp. CBA1104: Hrd1104_12940
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Entry
Hrd1104_12940 CDS
T06289
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hala
Halorhabdus sp. CBA1104
Pathway
hala03022
Basal transcription factors
hala03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hala00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Hrd1104_12940
09124 Replication and repair
03420 Nucleotide excision repair
Hrd1104_12940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hala03021
]
Hrd1104_12940
03036 Chromosome and associated proteins [BR:
hala03036
]
Hrd1104_12940
03400 DNA repair and recombination proteins [BR:
hala03400
]
Hrd1104_12940
Enzymes [BR:
hala01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Hrd1104_12940
Transcription machinery [BR:
hala03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Hrd1104_12940
Chromosome and associated proteins [BR:
hala03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Hrd1104_12940
DNA repair and recombination proteins [BR:
hala03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Hrd1104_12940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
ATPase
SLFN-g3_helicase
Zot
Sigma54_activat
nSTAND3
SecA_DEAD
AAA_34
TrwB_AAD_bind
PhoH
Glyoxalase
HBB
AAA_7
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QGN08282
UniProt:
A0A650A769
LinkDB
All DBs
Position
2591391..2593568
Genome browser
AA seq
725 aa
AA seq
DB search
MPDDDPDSPYERFFPYDEPYDHQREAIEGIAEALEDASDVLLEGATGTGKTLAALTPALE
HARRTDKTVVITTNVHQQMRQFTAEARAINHQESIRAIVFRGKASMCHIDVGYEECQALR
DTTHDLVDAESERADLERRQRDLLEESQAGDGDAAEARSAIMDELESVGEELQTLREEQS
TCEHYYHNLTSDTDDFYAWLYDDVRTPDEVYEYAERQGFCGYELLKDGIEGVDLVICNYH
HLLDPFVREQFFRWLGRDPSDVIAVFDEAHNVADAARDHARRTLAEPTLERALDELDGSD
DPRADAARNVLTTIHTALQETYEDALAFGQRETIEDDWEDLAIDNDDRRDDLTLSLLQHY
TGQGVSDDLASALKLGQALDQQYEDAFKDGETSVRKECPTLQAATFFEAWLAESDESGLY
PVVSVRRDDDNGDLYGRAELYTAIPQRVTSGLFEDLYATVLMSATLRPFDVTEDVLGLED
PVTMAYGPQFPAERRRTYAVDVPALFASRRDEPELQDTVAGVIEDAARMTPGNTLAFFPS
YAEAERYHDRVNIEGTRYLDEPGTRAQELRETFTADDDGVLFTSLWGTLAEGVSFDGDDA
RTVLVVGVPYPYLDERMDAVQAAYETAFDGEDAGWRYAVEIPTVRKTRQAMGRVIRSPED
FGARVLIDRRYTEDAEIQMPEYAVRGTFPPAERSEMIDVDPGKLKFGLLNFYADVEAYDG
DPPAP
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atcccggacgacgatccagactccccatacgagcggtttttcccctacgacgagccatac
gaccaccagcgcgaggccatcgagggaatcgccgaagcactcgaagatgcatcggacgta
ctgctcgaaggggccacggggacgggcaagacgctggcggcgctgacgcccgcactggaa
cacgctcgccgaaccgacaagacggtcgtcatcacgaccaacgtccaccagcagatgcgc
cagttcaccgcggaggcccgggcgatcaaccaccaggagtccatccgggcgatcgtcttc
cgcgggaaggcttcgatgtgtcacatcgacgtgggctacgaggagtgtcaggcgttgcgg
gatacgactcacgatctcgtcgacgccgagagcgaacgggccgacctcgaacgccgtcag
cgcgacctcttagaagagagccaggcaggcgacggcgacgcggccgaggctcgctcggca
atcatggacgaactcgagagcgtcggcgaagaactccaaaccctgcgcgaagagcaatcg
acctgtgaacactactaccacaatctcacgagcgatactgacgacttctacgcgtggctg
tacgacgacgttcggacgccggacgaggtttacgagtacgccgagcggcagggcttttgc
ggatacgaactcctgaaagacggcatcgagggcgtcgatctggtgatctgcaactaccac
cacctgctggacccgttcgttcgcgagcagttcttccgctggctgggccgggacccgagt
gacgtgatcgcagtcttcgacgaggctcacaacgtcgctgacgccgcccgcgatcacgcc
cgccggacgctggccgaacccacgctcgaacgcgctctcgacgaactcgacggaagtgac
gatccacgggccgatgccgcgcggaacgtcctgacgacgatccacacggccctccaggaa
acctacgaagacgccctggcattcggccaacgggagacgatcgaggacgactgggaggac
ctcgcgatcgacaacgacgaccgccgggacgatctcaccctgtcgctcctccagcactac
acgggccagggggtcagcgacgacttagcgagtgcactcaaactcgggcaggccctcgac
cagcagtacgaagacgccttcaaggacggcgagacgagcgtccgcaaggagtgtccgacc
ctccaggcggcgacgttcttcgaggcctggctggccgagagcgacgagtcggggctctat
ccggtggtgagcgtccgccgagacgacgataacggcgatctgtacggccgggcggaactg
tacacggccatccctcagcgcgtcaccagcgggctgttcgaggatctctacgcgaccgtg
ttgatgagtgcaaccctccgtccgttcgacgtgaccgaggacgtgttgggactcgaggac
ccggtgacgatggcctacggcccacagttccccgcggagcgccgacgcacctacgcggtc
gacgtccccgcgctgtttgccagccggcgtgacgaacccgaactccaggatactgtcgcg
ggtgtcatcgaggacgccgcccggatgacaccgggcaacaccctcgcttttttcccgagt
tacgccgaggccgagcggtatcacgaccgtgtgaatatcgaggggacccgctacctcgac
gaacccggcacccgcgcccaggagttacgggagacgttcaccgctgacgacgacggtgtg
ctgttcacctcgctgtgggggacgctggctgagggcgtcagtttcgacggcgacgacgcc
cggacggtcctggtcgtcggcgtgccttatccctatctcgacgagcgcatggacgccgtc
caggcggcctacgagacggccttcgacggcgaggatgccgggtggcgctacgccgtcgag
attcccaccgttcgcaagacgcgtcaggcgatggggcgggtgatccgctcgcccgaggac
ttcggggcgcgggtactgatcgaccggcgatacaccgaagacgcggagatccagatgccc
gagtacgccgtccgtggcacgtttccaccggccgaacggagcgagatgatcgacgtcgac
cccggcaagctcaagttcggattgctgaacttctatgccgacgtcgaggcttacgacggc
gatccgcccgccccttga
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