Halorubrum sp. BOL3-1: EKH57_10310
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Entry
EKH57_10310 CDS
T05834
Name
(GenBank) RNB domain-containing ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
halb
Halorubrum sp. BOL3-1
Pathway
halb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKH57_10310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halb03019
]
EKH57_10310
03016 Transfer RNA biogenesis [BR:
halb03016
]
EKH57_10310
Enzymes [BR:
halb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EKH57_10310
Messenger RNA biogenesis [BR:
halb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EKH57_10310
Transfer RNA biogenesis [BR:
halb03016
]
Prokaryotic type
tRNA degradation factors
EKH57_10310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QAU13081
UniProt:
A0A410TQG5
LinkDB
All DBs
Position
1935561..1936862
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AA seq
433 aa
AA seq
DB search
MSDDEPKQGSAEDQGPVTITPGLADRLAEKREELFEEFEIRDEFPSEVLREAERRTENVY
EEIGDEVDEREDLRDLTTWTTDPIDAQDFDDAISIRREEDAYRLWVHIADVTHYVTPDTA
MWEEAVQRANTVYLPDYTIHMLPPVLAETVCSLVPDEDRLAHTVEMEIDPETLSFEDIDI
YKSVINSDERLTYAQCEDRLEDPSLPLGEENQLAYELADRMHEQRKADGSLVLNPSRDRA
HTIIEESMLKANKAVTHTLMWDRGVEAMYRVHPQPTPDQWNEALKEIQELNGVSIPGDAW
GDDPRKAVNAALEESPERQLNKIQRAVLKVMPRAKYMNDPFGGHHALNFDIYGHFTSPIR
RLSDTINHWIVHENDVPENLIELCDHASDKQKDGETAERLYKQFLEEQGLDQHAVNNRGV
EVVDDPEEAKHTA
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgacgagccgaagcaagggtccgccgaggaccagggccccgtgacgatcacg
ccggggctggcggaccgactcgccgagaaacgcgaggagctgttcgaggagttcgagatc
cgcgacgagttcccgagcgaggtgctccgcgaggccgagcgacgaacggagaacgtctac
gaggagatcggagacgaggtcgacgagcgcgaggacctccgcgatctgaccacgtggacc
accgacccgatcgacgcccaggacttcgacgacgccatctcgatccgacgcgaggaggac
gcctaccggctgtgggtccacatcgccgacgtgacccactacgtcacccccgacaccgcg
atgtgggaggaggcggtccagcgcgccaacaccgtctacctgcccgactacacgatccac
atgctcccgccggtgttggcggagaccgtctgctcgctcgttcccgacgaggaccggctc
gcgcacaccgtcgagatggagatcgatccggagacgctgtccttcgaggacatcgacatc
tacaagtccgtcatcaactccgacgagcggctcacctacgcccagtgcgaggaccgactc
gaagacccctccttacccctcggcgaggagaaccagctcgcgtacgagctcgcggaccgc
atgcacgagcagcgcaaggcggacggttcgctcgtgttgaaccccagccgcgaccgcgcg
cacaccatcatcgaggagtcgatgctgaaggcgaacaaggcggtgacgcacaccctgatg
tgggaccgcggcgtcgaggcgatgtaccgcgtccacccgcagccgacccccgaccagtgg
aacgaggcgttaaaagagatccaggagctgaacggcgtctccatccccggcgacgcgtgg
ggcgacgacccgcgaaaggcggtcaacgccgctctcgaagagtcgccggagcgccagctc
aacaagatccagcgcgccgtgctgaaggtgatgccccgcgcgaagtacatgaacgacccg
ttcggcggccaccacgcgctcaacttcgacatctacggccacttcacctcgcccatccgc
cgcctgtcggacacgatcaaccactggatcgtccacgagaacgacgtgcccgagaacctg
atcgaactgtgcgaccacgccagcgacaagcagaaggacggcgagaccgcagagcggctc
tacaagcagttcctcgaagagcagggactcgaccagcacgcggtcaacaaccgcggggtc
gaggtcgtcgacgatcccgaggaagcgaaacacaccgcctga
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