Halorubrum sp. BOL3-1: EKH57_11955
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Entry
EKH57_11955 CDS
T05834
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
halb
Halorubrum sp. BOL3-1
Pathway
halb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
halb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EKH57_11955 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
halb03400
]
EKH57_11955 (uvrB)
DNA repair and recombination proteins [BR:
halb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EKH57_11955 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EKH57_11955 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
AAA_22
UB2H
DUF87
HEM4
Motif
Other DBs
NCBI-ProteinID:
QAU13370
LinkDB
All DBs
Position
2287532..2289586
Genome browser
AA seq
684 aa
AA seq
DB search
MSDADSPLSEDRPTVDRPLRVDAPFEPAGDQPGAIEGLVEGFESGAKKQTLLGVTGSGKT
NTVSWVAEELDQPTLVLAHNKTLAAQLYEEFRELYPDNTVEYFVSYYDYYQPEAYVEQTD
TFIDKEMSINEEIDRLRHSATRSLLTRDDVIVVASVSAIYGLGDPGNYRDMALRLEVGEE
VGREALLADLVDLNYERNDVDFTQGTFRVRGDTVEIYPMYGRHAVRVELWGEEIDRMLKV
DPMKGEVVSEEPAVMLHPAEHYSIPDDKLEQAVTEIEDLMEKRVRYFERQGDLVAAQRVE
ERTTFDLEMLREAGYCSGIENYSVHMDDRESGDAPYTLLDYFPDDFLTVIDESHQTIPQI
KGQYEGDKSRKDSLVENGFRLPTAYDNRPLTFEEFEEKTDRTLYVSATPSDYERETSENV
VEQIVRPTHLVDPNVEVTGATGQVEDLLERVDERIERDERVLVTTLTKRMAEDLTEYFEE
AGIDVAYMHDETDTLERHEIIRDLRLGNIDVLVGINLLREGLDIPEVSLVAILDADQEGF
LRSTTTLVQTMGRAARNVNGEVVLYADRVTDSMEEAIEETQRRREIQLEYNAEHGYEAKT
IDKPVGETNLPGSKTDTSSVSVGDVESEDEAEARIGALDDRMDEAASNLEFELAADLRDR
IAELRRAFEIGAGDEGVPAPAIDE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacgccgactcccccctctcggaggaccgaccgaccgttgaccgccccctccgc
gtcgacgccccgttcgagcccgcgggcgaccagcccggggccatcgaggggctggtcgag
gggttcgagtcgggcgcgaaaaaacagaccctgctcggcgtcaccggctccgggaagacc
aacaccgtctcgtgggtcgcggaagaactcgaccaacccaccctcgtactcgcccacaac
aagacgctcgcggcccagctgtacgaagagttccgcgagctgtacccggacaacaccgtc
gagtacttcgtgtcgtactacgactactaccagccggaggcgtacgtcgagcagacggac
acgttcatcgacaaggagatgtcgataaacgaggagatcgaccgcctccgccactccgcg
acgcgctcgctcctcaccagagacgacgtgatcgtggtcgcctcggtctcggctatctac
ggcctcggagacccggggaactaccgggacatggcgctccgcctcgaagtcggggaagag
gtcggccgcgaggcgctgctcgcggacctggtcgacctgaactacgagcgcaacgacgtg
gacttcacgcagggcaccttccgcgtgcgcggcgacaccgtcgagatctacccgatgtac
gggcggcacgcggtgcgcgtcgagctgtggggcgaggagatcgaccggatgctcaaggtc
gacccgatgaaaggcgaggtcgtctccgaggagccggcggtgatgctccacccggcggaa
cactactcgatcccggacgacaagctggagcaggcggtgaccgagatcgaggacctgatg
gagaaacgggtgcgctacttcgagcgacagggcgacctcgtggcggcccagcgggtcgag
gagcgcaccaccttcgacctggagatgctccgggaggcgggctactgctcggggatcgag
aactactcggttcacatggacgaccgcgagtcgggcgacgcgccgtacaccctgctcgac
tacttcccggacgacttcctcaccgtgatcgacgagtcccaccagacgatcccccagatc
aaaggccagtacgagggcgacaagtcgcggaaggactcgttggtcgagaacgggttccgg
ctcccgaccgcctacgacaaccgcccgctcaccttcgaggagttcgaggagaagaccgac
cgcacgctctacgtctccgcgacgccgagcgactacgagcgcgagacctccgagaacgtc
gtcgagcagatcgtccggccgacccacctcgtggacccgaacgtcgaggtgacgggggcg
accgggcaggtcgaggacctcctagagcgggtcgacgagcggatcgagcgcgacgagcgc
gtcctcgtcaccacgctcaccaagcggatggccgaagacctcacggagtacttcgaggag
gccgggatcgacgtggcgtacatgcacgacgagaccgacaccctcgaacgccacgagatc
atccgcgacctccggctgggcaacatcgacgtgctcgtcggaatcaacctgctccgggag
ggactcgacattccggaggtgagcctcgtcgcgatcctcgacgccgaccaggaggggttc
ctccgctcgacgacgacgctcgtccagacgatgggacgggccgcgcgcaacgtcaacggc
gaggtcgtcctctacgccgaccgggtgaccgactcgatggaggaagccatcgaggagacc
cagcgccggcgcgaaattcagctggagtacaacgccgaacacggctacgaggccaagaca
atcgacaagccggtgggcgagaccaacctcccggggtcgaagacggacacttcgtcggtc
agcgtcggcgacgtcgaaagtgaggacgaggcggaagcgcggatcggggcgctcgacgac
cggatggacgaggccgcgagcaacctggagttcgagctggcggccgacctccgcgaccgg
atcgcagagctgcggcgcgccttcgagatcggcgcgggcgacgagggcgtcccggcgccc
gcgatcgacgagtag
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integrated database retrieval system
