Halioglobus maricola: EY643_01610
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Entry
EY643_01610 CDS
T06250
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
halc
Halioglobus maricola
Pathway
halc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
halc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EY643_01610 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
halc03021
]
EY643_01610 (rpoD)
Transcription machinery [BR:
halc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EY643_01610 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QFU74454
UniProt:
A0A5P9NGX1
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All DBs
Position
complement(377639..379453)
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AA seq
604 aa
AA seq
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MNDAVQQQSRLKALIAKGKEQGYLTYAEVNDHLPQDISDPDQVEDIIQMINDMGIQVFEA
APDADELLMTEGDSSADDIAAAEAAAALAAVETEAGRTTDPVRMYMREMGTVELLTREGE
IVIAKRIEEGIRELLAALALYPGAVKSILDEYDLVAKEERRLADIMVGYLDPAEHVPSAA
EMAEAAANKSNSDDDDDEETDNGPDPVEAKKRFTALKRQYNKTEKAIAAKGRSDATTIKE
MEKLGDLFKFFKLTPRVFDPLTDSPRNILAGVRDQEREIMRIATRVCGMPRKDFIASYQG
SESDLKWVSRHARKKEYGPKLNAEKETLQRLQRRIAQFEEQTGLTVTEIKEINRRMSMGE
ARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST
YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDM
PEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTIHSPVDAATGQGLQEATKEVLA
GLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDYLRS
FLDE
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgccgtccaacaacagtctcgcctgaaggcgcttatcgccaaaggcaaagag
cagggttacctcacatacgccgaggtaaacgatcacctgccccaggacatttccgatccg
gatcaggtcgaagacatcatccagatgatcaacgacatgggtattcaggtgttcgaggcg
gcccccgatgccgacgagctgctgatgaccgaaggcgattcgtccgctgacgatatcgcc
gccgctgaagctgcggccgcactcgccgccgttgaaactgaagccggccgcaccaccgac
ccggtccgcatgtacatgcgcgaaatgggcaccgtggaactgctgacacgtgaaggcgag
attgtgatcgccaagcgtattgaagaaggtatcagggaattactggccgccctcgccctc
taccccggcgcggtcaaaagcattctcgacgaatacgacctggtagccaaagaagaacgc
cgcctggcagacatcatggtgggctacctcgacccggctgagcatgtcccttccgccgca
gaaatggccgaagctgctgctaacaagagcaacagcgatgacgatgacgacgaagagacc
gacaacggccccgatccggtagaagccaagaagcgcttcactgcgctcaagcgccagtac
aacaaaaccgagaaggccatcgccgccaaggggcgcagtgacgccactaccatcaaagag
atggaaaaactcggcgatctgttcaagtttttcaagctcacgcctcgcgtgttcgacccc
ctgaccgactcgccgcggaatatcctggccggtgtacgcgatcaggagcgcgagatcatg
cgcatcgccacccgggtctgcggcatgccgcgcaaagacttcatcgcgtcctaccagggc
tctgaatcagacctcaaatgggtctctcgccatgctcgcaagaaggagtacgggcccaaa
ctgaacgccgagaaggaaacccttcaacgcctgcagcgccgtatcgcccagttcgaagaa
cagaccggcctgaccgtcaccgagatcaaggaaatcaaccgccgcatgagcatgggtgaa
gcccgtgcccgccgcgccaagaaagagatggtcgaggccaacctgcgcctggtgatctcc
attgccaagaagtacaccaatcgcggcctgcagttcctggacctgatccaggaaggcaac
atcggcctgatgaaggccgtggacaagttcgaatatcgccgcggctacaaattctcgacc
tacgccacctggtggattcgccaggccatcacccgctccatcgccgaccaggcacgcact
atccgtattccggtgcacatgatcgaaacgatcaacaagctcaatcggatctcgcgccag
atgctgcaggaaatgggccgcgagcccacgcctgaagaactgggcgagcgcatggatatg
ccggaagacaaggtgcgcaaggtactgaagatcgccaaagagcctatttccatggagacg
ccgatcggcgacgacgaagattcccacctgggcgacttcatcgaggacaacaccattcac
tcccccgtggatgcagccaccggccagggcttacaagaagccaccaaggaagtattggcc
ggcctcactgcacgcgaggccaaggtgctgcgcatgcgcttcgggatcgacatgaacacc
gaccacaccctcgaggaagtgggcaaacagttcgatgttacccgggagcgaattcgccaa
attgaagcgaaggccctgcgtaagttgcgccatcccacacgctctgattacctgcggagc
ttcctcgacgagtag
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