Halioglobus maricola: EY643_10735
Help
Entry
EY643_10735 CDS
T06250
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
halc
Halioglobus maricola
Pathway
halc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EY643_10735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halc03019
]
EY643_10735
03009 Ribosome biogenesis [BR:
halc03009
]
EY643_10735
Enzymes [BR:
halc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EY643_10735
Messenger RNA biogenesis [BR:
halc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EY643_10735
Ribosome biogenesis [BR:
halc03009
]
Prokaryotic type
rRNA processing factors
EY643_10735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QFU76101
UniProt:
A0A5P9NJT5
LinkDB
All DBs
Position
2370143..2372989
Genome browser
AA seq
948 aa
AA seq
DB search
MKKMLINATQPEELRVALVDGQRLYDLDIENRTRIQKKSNIYKGKITRVEPSLEAAFVDF
GAERHGFLPLKEIAREYFYRKPDGDGRMKIKDVVKEGTEIIIQVDKEERGNKGAALTTFI
SLAGRYMVLMPNNSRAGGISRSIEGDERSELRENMSHLEIPNGMGVIVRTAAVGRSTEEL
QWDLNYLLSLWEKIGNANEEVKSPNLLFQESNVIIRAVRDYLRDDIDQVLIDSTDAFKQA
QDFVGMVMPQYKSRLRMYEDNIPMFNRFQIESQIETAFQREVRLPSGGSIVIDPTEALVS
IDINSARATKGKDIEETALKTNLEAADEVARQLRLRDMGGLVVIDFIDMMASKSQRQVEN
RMRDALDIDRARVQVGRISRFGLLEMSRQRLRPSLGETSGKVCPRCNGQGTIRDTKSLAL
SILRLLEEEAIKERSAEVRAIVPVDVAAYLLNEKRGALNDVERDTKVRVLVVPNPNLETP
HFEVQRLRDDEVEGHEISYKIDIAEPDMDAITDSHKAAIPVQQAAVQAIAPTAPAPEAAP
RQEKPKQQNRNRGGKQQAKPEPKPKAGLFSRIWSAIAGEPEVEEKPAEKKPQGRQQRQGE
GEQKSGGNNRNRNRNRNRNRNRNGERSGDGQQRGENRNQQNRGNEQRGEQERRDPQQRSE
SGEGQKRQRNEEGGNNRNRNRNRRRNNDDRRKQDVAAETPVENQQDTAAQSEERREDAPR
KRPSEMKRGEPRRRRNRGRKPEGEAATGNVEALAAKPKPAPEARPEAEQAPAPVAAEPTT
EAPAVAAPVVETPAAAATPAAPASTAPAELEAPVATAEASTPEAKPGAEAPAEPVAAAPA
QATPAPVEPVAETPAPKAAPVGITADGRAVNDPRIAAKPVTDVEVSTNTFALFSDEVAPA
ATHSGRIVARAPNDPRGALPEAAAPVAEEAPATEPVTEATEEEEAAQV
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaatgcttatcaatgcaactcaacctgaagagttgcgcgttgcgctggtcgac
ggccagcgtctatacgacctggacatcgagaaccgtacccgaatccagaaaaaatccaac
atctacaagggcaaaattacccgtgtagaaccctcgctcgaagcggcgtttgtcgacttc
ggcgccgagcgccacggcttcctgccactgaaggaaatcgcccgagaatacttctaccgc
aagccagatggcgacggtcgaatgaaaatcaaggacgtggtcaaggaaggcaccgagatc
atcatccaggtggataaggaagagcgcgggaacaagggcgctgctctcaccacgtttatc
agcctcgctggccggtacatggtactcatgcccaacaactcccgtgctggcggcatctcc
cgcagcattgaaggcgacgagcgcagcgaattgcgcgaaaacatgtctcacctggaaatc
cccaatggcatgggggtgattgtgcgcaccgccgctgtgggccgctccaccgaagaactg
cagtgggatctcaactacctcctgtcgctgtgggaaaagattggcaacgccaacgaagag
gtaaaatcccccaacctgctgttccaggaaagtaacgtgatcattcgcgccgtgcgcgac
tacctgcgcgatgacatcgaccaggtgctgatcgactccacggatgccttcaaacaggct
caggattttgtcggcatggtaatgcctcagtacaaaagccgcctgcgcatgtacgaagac
aacattccgatgttcaaccgcttccagatcgagagccagatcgagaccgcgttccagcgc
gaagtacgcctgccctccggcggctccattgtgatcgatccaaccgaggctctggtctcc
atcgatatcaactccgcccgtgccaccaagggtaaggacatcgaggaaactgcgctcaag
accaacctggaggccgccgacgaagtggcccgccagttgcgactgcgcgacatgggtggc
ctggttgtcatcgatttcatcgacatgatggcatccaagagccagcgccaggttgaaaac
cgcatgcgcgacgctctggatatcgaccgtgcccgggtacaggtcggccgtatctcaagg
tttggcctgctagaaatgtcacgccagcgcctgcgtccatcactcggcgaaaccagcggc
aaagtctgcccccgttgtaacggtcaaggcactatccgcgacaccaaatcacttgcactc
tcaatcctgcgcttgctggaagaggaagcaatcaaggagcgcagcgctgaagtccgtgcc
atcgttccagtggacgtggctgcctacctgctcaacgaaaagcgtggcgctctcaacgat
gtagagcgcgacaccaaagtacgcgtactcgtggtacccaaccccaacctggaaacacca
cacttcgaagtacagcgcctgcgtgacgacgaggtagaaggccacgagatcagctacaag
atcgatatcgctgagcccgatatggacgctataaccgacagccacaaggctgccattcct
gtccagcaagccgctgtccaggcgatagcaccaacagcgccagcgccagaagccgctcct
cgtcaggagaagccgaagcagcaaaatcgcaaccgcggtggcaagcaacaagccaaacct
gagcccaagcctaaagcgggtctgttctctcgtatctggtccgccattgccggtgaacca
gaggttgaggaaaaacctgccgagaagaagcctcagggtcgccagcaacgtcagggcgag
ggcgagcagaaatccggcggcaacaaccgtaaccgcaatcgcaaccgcaaccgcaatcgc
aaccggaatggcgagcgcagtggtgacggtcagcagcgcggcgagaaccgcaatcaacag
aaccgcggcaacgagcagcgcggcgagcaagaacgccgcgatccacagcaacgttccgag
agcggcgaaggccaaaagcgtcagcgcaacgaagaaggtggcaacaaccgcaaccgtaat
cgcaaccgccgtcgcaacaacgacgaccgtcgcaagcaggatgtcgccgctgaaacgcct
gttgaaaaccagcaggacaccgccgcacagagcgaagaacgccgtgaagacgccccacgc
aagcgcccgtctgagatgaagcgtggcgagccccgccgtcgtcgcaaccgcggccgtaag
cctgaaggagaagctgcaaccggaaatgtggaagcacttgccgccaagcccaagcccgcg
cccgaggccaggccagaagctgagcaagcgcccgcacccgttgcggcagaacccacgacg
gaggcccccgccgttgctgcgcctgtggtagaaacgcctgccgctgcagccactcccgca
gcaccagcgtccactgcccctgctgaattagaagcgcctgttgcgactgcagaagcctcc
acgcccgaagcgaaacctggtgcagaagcgcctgctgagccggttgctgcagctcctgca
caagccacaccggctcctgttgagcctgtggccgaaacgcctgcaccgaaagcggccccc
gtcggcattacggctgatggccgtgcggttaacgacccacgcattgcagccaagccggtt
accgacgttgaggtgagcaccaacacattcgcactgttcagtgacgaagtcgctccagcg
gctacgcacagcggccggattgttgcgcgcgcgccgaacgacccacgtggtgcattgccc
gaggcagctgctccggtagcagaagaagcgccggcaactgagccggtcaccgaagctaca
gaggaagaagaagccgcccaggtgtaa
DBGET
integrated database retrieval system
