Halioglobus maricola: EY643_13480
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Entry
EY643_13480 CDS
T06250
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
halc
Halioglobus maricola
Pathway
halc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
halc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EY643_13480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
halc03019
]
EY643_13480
Enzymes [BR:
halc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EY643_13480
Messenger RNA biogenesis [BR:
halc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EY643_13480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
QFU76585
UniProt:
A0A5P9NM61
LinkDB
All DBs
Position
complement(2958175..2959500)
Genome browser
AA seq
441 aa
AA seq
DB search
MSFEQLGLAPALLQAVQEKGYSEPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLL
QRLHESAPVHPHRLRALVLTPTRELAAQVAESVDTYGTHLPLKSTVVFGGVKINPQIAKL
RRGVDILVATPGRLLDLHGQGEIDFSELEILVLDEADRMLDMGFIHDIRRILKLLPDQRQ
NLMFSATFANEIRSLTASILSNPVEVEVNPANATADTVEQWVYPVDKKRKGALLRELVID
HNWQQVLVFTRTKHGANRLAQQLDKAGLEAAAIHGNKSQGARTRALEGFKAGKVRVLVAT
DIAARGLDIAQLPQVVNFDLPNVAEDYVHRIGRTGRAGATGKAFSLVSADESKQLNGIQQ
LIQRHITREYVDGFEPEHDVPENAPLRRAHKPSKHAGKAKSGGQRQGNSGGNGNRNEGSR
PPRRRRRSRAGSPSSSNGNRA
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgagcaattgggcctcgcccctgcgctgcttcaggccgttcaggaaaaaggc
tacagcgaaccttcccccattcaggcgcaggctattcctgctgtactgtcgggccgcgat
gtcatggccgccgcccagaccggcacgggtaaaaccgctggcttcaccctgccgttgctg
cagcgcctgcacgagagcgcacctgttcatccgcatcgcctgcgggccctggtgctgacg
cccacgcgagagctggctgcccaggtggccgaaagtgtcgacacttacggcacccatctg
ccactcaagtccactgtggtcttcggcggggtcaaaatcaatccgcagattgccaagttg
cgccgcggtgtggatatcctggtggctactccgggccgtctgctcgacctgcatggacag
ggcgagatcgatttttccgagctggaaattctggtgctggatgaagccgaccgtatgctt
gatatgggtttcattcacgacattcgtcgtatcctcaaattgcttcccgaccagcgccag
aacctgatgttttcggcgacctttgccaatgagattcgctctcttaccgccagtatcctg
agcaatccggtcgaggttgaagtgaaccctgccaatgccaccgccgacacggttgagcag
tgggtgtacccagtcgacaagaagcgcaagggagcacttctgcgcgaattggtgatcgac
cacaactggcagcaggtattggtgtttacccggaccaaacacggtgccaaccgtcttgca
cagcagttggacaaagctggtctcgaggctgcggccattcacgggaacaagagtcagggc
gcgcgtactcgagccctggaaggttttaaggctggcaaggtacgagtacttgttgcgact
gatatcgcggctcgcggcctcgacatcgcccagctgccccaggtggtgaacttcgacttg
cccaatgtagctgaagattacgttcaccgtattggccgcaccggtcgcgctggcgctacc
ggcaaagccttttcactggtgagcgccgacgagagcaagcagctcaatggtattcagcag
ctgatccagcgccatattacccgtgagtacgtcgacggttttgagcccgaacatgacgtg
cccgagaacgcaccactgcgccgggcacacaagccgagtaagcatgcagggaaagccaaa
tccggtggccaacgccagggcaatagcggcggcaacggtaatcgcaatgagggcagccgg
ccaccccgtcggcggcgcaggtcacgcgctggctcgccttccagcagtaatggtaatcgg
gcttag
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