Haliaeetus albicilla (white-tailed eagle): 104314729
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Entry
104314729 CDS
T08398
Symbol
DCHS1
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-16
KO
K16507
protocadherin-16/23
Organism
hald
Haliaeetus albicilla (white-tailed eagle)
Brite
KEGG Orthology (KO) [BR:
hald00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hald04515
]
104314729 (DCHS1)
Cell adhesion molecules [BR:
hald04515
]
Cadherins
Cadherin related
104314729 (DCHS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
PKD
Motif
Other DBs
NCBI-GeneID:
104314729
NCBI-ProteinID:
XP_009912664
LinkDB
All DBs
Position
Unknown
AA seq
1748 aa
AA seq
DB search
VTATDADSGTFGSLSYSIGSGIGSVVPTQFSIDKHTGQLCTVQPLDRDEGTSAYDFTITA
VDGGGLNSMVYVKVFLEDINDNRPVFYPLEYAASISTQSMPGTAVLRVTAHDKDEGLNGK
VTYRIVLGNSPPLFSLNKDTGVISLSWSLSGKANTLVQLVISAQDGGGLQAQPNARVNIS
IVEGTVSPPVFEQAQYFFTVPEDMLQGASVGAVRAQNPPGHADDIFYSISSGDPHGYFSI
DSASGQLRTSLPLDHESQAVLILDVQARSGSPPAYSNTRVKISVSDVNDNVPVFPAPSDS
ILLPEATEPGTTVYTLQAEDRDSGANGQVNFELLSGGDGTFSVERSSGAVRLIGALQYEA
SAAYRLAIVARDNGVPQLSSTFTLLVHVQAEHDNGPIFDTLTYRVEVQEGVPGSTRFLQV
RALAHDAESMTLTYHLRADGDAASFGIMPESGWLYVKSALDRETRDLYVLTVLASAGGSG
AGGEARKTGTSTVRISITDENDNSPRLSEERYFFTVPENQAPGSSVGRVMASDRDAGQNS
RLTYRLLQHDPNFLIHTQTGELSTKHSLDREQQSSYQLLVIVQDGGAPPRSATGTIYVTV
LDENDNAPAFLHVASGQELPVQVLEEKPSGLLVASLQAKDPDEGENGTIIYSLIGAWAER
FTLHMATGELRTATVLRRSDRAEYIFTVTASDRGTVPRSTSAIIRIQVLPSSRVLPRPDA
TVLTLHPLEGVKPGSVIGSVAPPDAPARGQLTYTVVGGGGGGTFVVDIQIHVQDCNDQAP
TFPEDPITIVVPENAQAGSSIFTFQALDGDGVGPNSQVRYALLHQEPPGAPFQLDSHSGL
LTLRQSLDRAAAASFLLVVEATDQARNISQRRSAAVTARVFVTDENDNVPVFLSPAAVSV
MEDQPTGFVVLHVVAQDNDLGENGRVSYSLRAGNSDGRFHLNPGTGALSIVRALNREEVV
QHNLTVVAMDHGFPRRSATQLLSVLVLDVNDEAPTFEKPEYEAHIMENLPAGSPVLQVLA
TDRDLGANGQVSYGGLSGGPFSIHPQTGLIVTTHALDREEQEQHVLMVYARDGGLPPNLS
KATVRITVGDENDHAPYLESESCSVEVPENQSRVALYTLRATDPDGGENGRLEYHVADGD
PGQDFSLDPVSGVLSTARALDREQVASYSLTVVVQDHGTPPRSATMSVNVRVLDLNDNAP
GFAQATYVVEVPEDLPVGALVLQLVAEDPDEGTNGQVSYYLGNESLGMFQVEPQSGHIRS
AQALDRERHPSYSFLAKAVDSAPWEPKSAAVRVMVTVQDVNDHAPTFLHSPLTVNLSRHT
SLKQVVATMRAEDRDAGANASLLYSLATPILATDLGQPALSSTGVVVIHLQEEPYRGLRF
PRSTSDVALPENAAPGTAVASIQAMHMGGSSGRITYSIVSGNEKNTFLIQPSSGAISVQD
SSSLDFEASPRLRLVVQAETAASFSFMAINLNLQDVNDNLPRFQLQNYVAFIWESQSYDS
PVIQVLADDLDQGANGQVTYAINQSLPMTGLYHIDPQTGTITTAAILDREIWSQTRLVVT
AMDRGTPPLVGSATLTVVVMDINDNSPTIPFPWEVRVPENTLLGTQIAQLTGNDVDSGPA
LSYTLMLDGDAVGTFSVLRYGGRIALTGPLDYEQRSHYTVTLRASDTRHETEANLTVVVE
DVNDNAPTFSQGFYQVTLPEHTPAGSIIXSTDPDSGSNGDVTFHLAVPSPDIAIDPSNGT
LFTIRRVE
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
gtgacagccacagatgcagacagcggcacttttggctccctttcctactccattggttct
ggcatcggcagtgttgtccccacgcagttcagcattgacaagcacacggggcagctgtgc
actgtgcagcctctggatcgtgatgagggcacatctgcctatgattttaccatcactgct
gttgatgggggtggcctgaactccatggtgtatgtgaaggttttcttggaggacataaat
gacaaccggccagtgttttacccgctagagtatgctgccagcatcagcacacagagcatg
ccaggtacagctgtgctgcgtgttactgcccacgacaaggatgaggggctgaatgggaaa
gtgacctaccgcattgtcctgggaaactcaccccctctcttctccctcaacaaggacaca
ggtgtcatctccctctcatggtccctgagtggtaaagccaacaccctggtgcagctggtg
atctctgcacaggatggtgggggcctacaggcacagccaaatgcccgggtgaacatcagc
atcgtggagggcacggtctcaccccctgtctttgagcaagctcagtacttcttcacagtg
cctgaggacatgctgcagggtgccagtgtgggggctgtccgggcccagaaccctccaggt
catgctgatgacatcttttattccatctcctcgggggatcctcatggctacttttccatt
gactctgcctccgggcagctccgcaccagcctgcctcttgatcatgagtcccaggcagtc
ctcattctggatgtccaggcccgaagtggttcacctcctgcctatagcaacacacgtgtg
aaaatctctgtgtcagatgtgaatgacaacgtgccagtgttcccagccccctctgactcc
attctgctgccagaggccacagaacctgggactacagtgtacactttgcaggccgaggac
cgtgacagcggtgccaatggtcaggtgaattttgagctgctgtcaggaggtgatggcacc
ttcagtgtggagcgctcatcaggggcggtgcgactgatcggggccctgcaatatgaagcc
agcgcagcctacaggctggccattgtggcccgagacaatggtgttccccagctcagctcc
acattcacgctgctggtacatgtgcaagccgagcacgacaatgggcccatctttgacaca
ctcacctaccgcgtagaggtgcaggaaggtgtgcctggctccacccgcttcctgcaggtg
cgggcactggcacacgatgcagaatccatgacccttacctaccacttgcgtgcagatggg
gatgctgccagctttggcatcatgcctgagagtggttggctctatgtcaaaagtgcactg
gaccgggagacacgagacctgtatgttctcacagtgctggcctcagcaggaggcagtggt
gcaggaggggaagcccggaaaacaggcaccagcactgtacggatcagcatcacagatgag
aacgacaacagcccacggctgagcgaggagcgttacttcttcactgttcctgagaatcag
gctcccggtagcagtgtggggagggtgatggcaagtgaccgggacgctgggcagaacagc
cgactcacctaccgcttgctccagcacgatcccaacttccttatccacacacagacaggg
gagctcagcaccaagcatagcctggaccgggagcagcagtccagctaccagctcttggtg
atcgtgcaggatgggggagcaccaccccgcagtgccacaggaaccatctatgtcactgtg
ctggatgagaatgacaatgctcctgctttccttcatgtggccagtggtcaggagctgcct
gtgcaggtgctggaagagaagccatcgggacttctagtcgcctccctgcaagccaaggac
cccgacgagggtgagaatgggaccatcatctactcactgataggagcctgggcagagcgt
ttcacactgcacatggctactggagagttgcggactgccacagttctacgccggtctgat
cgtgctgagtacatcttcaccgtgacagccagtgaccggggcacggtgcctcgcagtaca
tcagccatcattcgcattcaggtactgccatcctcccgggtgctgccacggcctgatgcc
actgtgctgactctgcaccctctggaaggggtcaagccggggtctgtgattggctcggtg
gcacccccagatgcccctgcgcgaggacagctgacctacacagtggtagggggtggtggg
ggtggcacctttgtggttgacatacagatccacgtgcaggactgcaatgaccaggcgccc
accttccctgaagacccgattaccatcgtggtgcccgagaatgcccaggctggctcatcc
atcttcaccttccaggcgctggatggggatggcgtgggtcccaatagccaggtgcgctac
gccctgctgcaccaggagccccctggggctcccttccagcttgacagccactcggggctg
ctgacccttcgccaaagccttgaccgggcggctgctgcctccttcctcttggtggtggag
gccacagaccaggcccgcaacatcagccagcgccgctcagcagctgtcacagcccgtgtg
tttgtgactgatgagaatgacaacgtgcccgtgttcctctcacctgctgccgtcagcgtc
atggaggaccagccgacggggttcgtggtactgcatgtggtggcccaggacaacgatttg
ggagagaacgggcgtgtgagctactctttgcgagcaggcaacagtgatggccgcttccac
cttaaccccggcactggtgcgctctccattgtgcgggccctgaaccgggaggaggtggtg
cagcacaacctgaccgtggtggccatggatcacggtttcccacgccgctccgccacacag
ctactgtccgtgctggtgctggatgtcaacgacgaggctcccacttttgagaaacctgag
tatgaagcacacatcatggagaacttgccagctggcagccctgtgctgcaggtgctggcc
acggaccgggacctgggtgccaatgggcaggtgtcctatgggggtctctctgggggaccg
ttctccatccacccacagacagggcttattgtcaccacacatgccctggaccgtgaggag
caggagcaacacgtgctgatggtctatgcacgggatggtggccttccccccaacctctcc
aaggcaactgtgcggataacagtaggggatgagaatgaccatgcaccatacctagagagt
gagtcctgctctgtggaggtccccgagaatcaaagccgtgtggcactctacaccctgcgg
gccaccgatcctgatggaggcgagaatgggcgcttggaataccacgtggcagatggagac
cctgggcaggatttcagcctagacccagtctccggtgtcctctccactgcacgtgccctt
gaccgggagcaagttgcttcctacagcctcacagtggtggtgcaagaccacggcacccct
ccgcgcagtgccaccatgtcagtgaacgtgcgggtgttggacttaaatgacaacgcacct
ggttttgctcaagccacctatgtggtggaggtgccagaggacttgcctgttggtgccctg
gtgctgcagctggtggctgaggaccctgatgagggcaccaatgggcaggtctcttactac
ctgggcaatgagtcacttggcatgttccaggtcgagccgcagagtgggcacatcagaagt
gcccaggcgctggaccgggaacgccaccccagttacagcttcctggccaaggctgtggac
tcagcaccatgggagcccaagagcgcagctgtgcgtgttatggtcacggtgcaagatgtc
aatgaccatgcccccaccttcctgcacagccccctcactgtcaacttgtcccgccacaca
tcactcaagcaggtcgtggccaccatgagggcagaggacagggatgcaggtgccaatgcc
tccctcctgtatagccttgccacccccatcctggccacagacctggggcaaccggcactc
tcctctactggtgtggtggtgatccatttgcaggaagagccctaccgggggctgcgcttc
ccccggagcaccagtgatgtggccctgccagaaaatgctgctccaggcactgctgtggca
agcatccaagctatgcacatggggggctcttctgggcgcatcacatacagcatcgtcagc
ggcaacgagaagaatactttccttatccagcccagttcaggggccatctcagttcaggac
tccagcagcctggattttgaggccagcccccggctgcgccttgtggtccaggcagagaca
gcagcttccttcagctttatggccataaaccttaacctgcaagatgtgaatgacaacttg
ccacgcttccagctgcagaactacgtggcgttcatctgggagtcacagagctatgactca
ccagtcatccaggtcctggcagatgatctggatcagggagcaaatgggcaggtgacttat
gccatcaatcagtccctgccaatgacaggcttgtaccacatcgatcctcagactggcact
atcactactgctgccatcctggacagggagatctggtcccagacccgtttggtggtaacg
gcaatggacagagggactccgcctcttgtgggctctgccacgctgaccgtcgtggtgatg
gacatcaatgacaatagccccaccatcccgtttccctgggaggtgcgggtcccagagaac
acgctgctgggcacccagatagcccagctgaccgggaatgatgtggactcaggccccgcg
ctctcctacacgctcatgctggatggtgatgccgtgggcacattcagtgtgctgcggtat
gggggacgcattgccctgacagggccactggactatgaacagcgcagccactacactgtc
accttgcgtgcctctgacacccgccatgagaccgaggccaacctcactgtcgttgtggag
gatgtgaatgacaacgcaccgactttcagccagggcttctatcaggtgacgttgccagag
cacacgcctgcaggcagcatcattnnttcaaccgacccagactcagggagcaatggggat
gtcaccttccacctggccgtgcccagccctgacatcgccatcgaccccagcaatgggacc
ctcttcaccatccggcgggtggaa
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