Haliaeetus albicilla (white-tailed eagle): 104316907
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Entry
104316907 CDS
T08398
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
hald
Haliaeetus albicilla (white-tailed eagle)
Pathway
hald03008
Ribosome biogenesis in eukaryotes
hald03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hald00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104316907 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
104316907 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hald03021
]
104316907 (XRN2)
03019 Messenger RNA biogenesis [BR:
hald03019
]
104316907 (XRN2)
03009 Ribosome biogenesis [BR:
hald03009
]
104316907 (XRN2)
03016 Transfer RNA biogenesis [BR:
hald03016
]
104316907 (XRN2)
Transcription machinery [BR:
hald03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104316907 (XRN2)
Messenger RNA biogenesis [BR:
hald03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104316907 (XRN2)
Ribosome biogenesis [BR:
hald03009
]
Eukaryotic type
Pre-60S particles
RNases
104316907 (XRN2)
Transfer RNA biogenesis [BR:
hald03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
104316907 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
104316907
NCBI-ProteinID:
XP_009915817
LinkDB
All DBs
Position
Unknown
AA seq
982 aa
AA seq
DB search
MCRVRICWRKAGGKGIWWELENNVSLPATPIEHMTVDVAFSLSQLGLWVFRVLTPEHAKE
CNGVKAPIDTSKPNPNEVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRI
FNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAEEKQKIRREILAKGGILPP
EEVKERFDSNCITPGTEFMDNLAKCLRYYIADRLNSDPGWKNLTVILSDASAPGEGEHKI
MDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREEFKPNKPKPCALCNQ
MGHEVKDCQGLPREKQGKHDQFADSLPIAEQEFIFIRLCVLREYLERELTMASLPFTFDF
ERSVDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGFVNLQR
VQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKEKRKRMKRDQPSFIPGGQFSPQALGNRSS
PQAISNPRQAAFEMRMHDRQNSTTSSSPNTSLTSDGSPSLAGGIKRKAEDSDSEPEPEDN
IRLWETGWKQRYYKNKFDVDASDEKFRRKVVQSYVEGLCWVLRYYYQGCASWNWYYPFHY
APFASDFEGIADMPSDFEKGSKPFKPLEQLMGVFPAASGNFLPPTWRKLMTDPESSIIDF
YPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEESRRNSLGGDVLFVGK
HHPLCDFIVEQYKTKNTEPVDIPPELCHGIQGKLTLNENAVLPDQTVESPVPMLRDLAQN
SAVSISFKDPQFDEDFVFKAIVLPGAKKPAPVLKPGDWEKNNNDGRPWRPQLSFNRDRKP
VHLDQSAFRTLGHTMPRERGMPGMYANAVPLGTYGSPYTRPLLSGQQQIPKLLSNLRPQE
SWRGPTPLFQQTPQRTAGAAPLLAWNRMLQSQNQYQPSQYQGLGGPMSYPQRPEDRMDRG
RQAYGPGRPYPLPPSSGRYSWN
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcgtgttcgcatctgctggagaaaagcaggtggcaagggtatttggtgggaactg
gagaacaatgtctctctaccagctacacctattgagcatatgactgttgatgtggcgttc
tctctctcccagctgggactgtgggtcttcagagtactaacacctgaacatgctaaagag
tgcaatggcgtcaaggctccaattgatacaagcaaacctaaccctaatgaggtggagttt
gataacctatatttggatatgaatggtataattcacccttgtacgcatccagaagacaag
ccagcacccaaaaatgaagatgaaatgatggttgcaatttttgagtatattgacaggatc
ttcaacattgtaagaccaaggcgacttctttacatggctatagatggagtagctccacgt
gcaaaaatgaatcaacagcggtcaagaagattcagagcatcaaaggagggcatggaagct
gctgaagagaagcaaaaaataagacgagaaattctggcaaaaggtggcattcttcctcca
gaagaagtgaaagagaggtttgacagcaactgtattaccccgggaactgagtttatggac
aatcttgctaaatgtctccgctattacattgctgaccgtttgaacagtgacccagggtgg
aagaatttgacagttattttgtctgatgctagtgctcctggtgaaggtgaacataaaatc
atggattacattagaagacaaagagctcaaccaaaccacgacccaaacactcatcattgt
ctgtgtggggctgacgctgatctgatcatgcttggcttagctacacatgaaccaaacttc
actataattagggaagagtttaaaccaaataaacccaagccatgtgctctttgtaaccag
atgggtcatgaggttaaggattgccaaggtttgcccagagaaaaacaaggcaagcacgat
cagtttgcagacagtcttcctattgctgaacaagaatttatcttcatccgattatgtgtt
ttgcgagagtatttggaaagagaactcactatggccagtttgcctttcacttttgatttt
gaaagaagtgttgatgactgggtctttatgtgcttctttgtgggaaatgactttcttcct
catctgccatctttggagatcagggagggagcaattgatcgcttggttaacatatataaa
aatgtggtgcacaaaactggggggtacctcacagaaagtggttttgtcaacctacagcgg
gtccagatgatcatgttagctgttggagaagttgaagatagtattttcaaaaagaggaaa
gatgatgatgataactttaaaagacggcagaaagaaaaaagaaaaagaatgaagagggat
cagccttcttttattcctggtggacagttctcccctcaagctctgggaaatcgatctagt
cctcaggcaatcagtaaccctagacaagccgcctttgagatgagaatgcatgacagacag
aattctacaacttcatcatctccaaataccagcctcacttctgatggcagcccatccctg
gcaggaggaattaagcgaaaagctgaagatagtgacagtgaacctgagccagaggataat
atcaggttatgggaaactggttggaaacagcgctactataagaacaaatttgatgttgat
gcatctgatgagaaattccgtcgtaaagttgtacagtcctatgtggaagggctttgctgg
gttctcagatattattatcagggctgtgcatcctggaactggtattacccttttcactat
gctccatttgcttctgactttgagggtattgcagacatgccttcagattttgagaagggc
tcaaaaccgtttaagcctcttgaacaacttatgggagtatttccagctgcaagtggaaat
tttctgccgccaacatggaggaagctcatgacagatccggaatcaagcataattgacttc
taccctgaagattttgctattgatttaaatgggaagaaatacgcttggcaaggtgttgcg
ttattgccatttgttgatgagcgacgccttagagctgccctggaagaagtctaccctgac
ctcactcctgaagaaagcagaagaaatagccttggtggtgatgttctctttgttggaaaa
caccatccactttgtgactttattgtagaacagtacaagaccaaaaatacagagccagtg
gatatacccccagagctgtgccatggaatccagggaaagcttacactgaatgaaaatgct
gttcttccagatcagacagtggagtctcctgttccaatgctgcgtgatcttgcacaaaat
tctgcagtcagtatctctttcaaagatccgcaatttgatgaagactttgttttcaaggct
atagtgttacctggtgcaaagaaacctgctccagttctgaagccaggagactgggaaaaa
aacaacaatgatggcaggccttggagaccacagcttagttttaacagagacagaaaacca
gtccatttggaccagtcagcattcagaactttgggccatacgatgccaagggaaagaggg
atgccaggaatgtatgccaatgcagtacctcttggaacttacgggagcccgtataccagg
ccacttctgagtgggcagcagcagattcctaaattgttgtcaaatcttagaccccaggag
tcttggcgaggtcctacgcccttgtttcaacagacaccacaaagaactgctggggctgct
cctcttcttgcctggaaccgcatgctgcaatcccaaaaccagtaccagccaagtcagtac
caggggctgggcggaccaatgagttacccacagagacctgaagatcggatggacagggga
aggcaggcatatggccccgggaggccctacccgctaccaccttcctcaggaagatacagc
tggaattag
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