Haliaeetus albicilla (white-tailed eagle): 104324486
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Entry
104324486 CDS
T08398
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hald
Haliaeetus albicilla (white-tailed eagle)
Pathway
hald03013
Nucleocytoplasmic transport
hald03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hald00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104324486 (UPF1)
03015 mRNA surveillance pathway
104324486 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hald03019
]
104324486 (UPF1)
Enzymes [BR:
hald01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104324486 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104324486 (UPF1)
Messenger RNA biogenesis [BR:
hald03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104324486 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104324486 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104324486
NCBI-ProteinID:
XP_009927032
LinkDB
All DBs
Position
Unknown
AA seq
1049 aa
AA seq
DB search
MSFQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPA
CVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVF
LLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQL
RARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKL
EADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAP
LWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKT
FAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSL
IQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSR
EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMN
ADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPV
VMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAAD
RVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ
IGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQG
IGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRES
LMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMI
SAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPG
TSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKS
QIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttcaggttaatggacctgatggcattctacagaatggagctgtggatgataat
gtggctaaaaccagccagcttctggcagaattgaattttgaagaagatgaagaagatacg
tattacacaaaggatcttcctgtgcatgcttgcagttactgtggtatccatgaccctgct
tgtgtggtttactgtaacaccagcaaaaagtggttctgtaatgggcgtggaaatacatct
ggcagccacattgttaatcatcttgtgagagcaaagtgcaaagaggtgactcttcataaa
gatggacctctaggagagactgtcttggaatgttataactgtggatgtcgtaatgtgttt
ctccttggctttattccagctaaggcagactctgtggttgttttgctgtgcaggcagcca
tgtgccagtcagagcagtttaaaggatattaattgggacagttcacagtggcagcctctt
atccaagatcgctgtttcctttcgtggctggtaaagattccatctgaacaggaacagttg
agggcacgtcagattacggctcaacagattaacaaactggaagaactttggaaggaaaat
ccatctgcaacccttgaggacttagaaaagcctggtgttgatgaagagccacagcatgtc
ctgcttagatatgaagatgcttatcaataccaaaatatatttggtcctctagtcaagctt
gaggcagactatgacaagaaactcaaggagtctcagacccaagataacatcacagtcaga
tgggacctgggcttgaacaagaaaagaattgcttatttcactttgccaaagactgattca
gatatgcgtcttatgcaaggagatgagatctgcttgaggtataaaggagacctggcccct
ttatggaaaggaattggtcatgttatcaaagttcctgatagttctacagattatggtgat
gagatagccattgaactgaggagcagcgttggagcgcctgtggaagttactcataacttc
caagtagattttgtatggaagtctacttcatttgacagaatgcagagtgctttaaaaaca
tttgctgtggatgagacttcagtgtctgggtacatctatcacaaactgttaggtcatgag
gtagaagatgtaattattaaatgccagttgccaaagcgctttacagcacaaggacttcct
gatctcaaccattctcaggtttatgctgtgaagactgtcctgcagcgtcctctgagcctt
attcagggtccccctggtaccggaaaaacagtgacatcagccacaattgtctatcatctg
gctagacagggcaatgggcctgtgttagtctgtgctccgagtaatatagctgtagatcag
ttgactgagaagatccatcaaactggactgaaagtggttcgtctgtgtgctaaaagtcgt
gaggcaattgactctcctgtatccttcttggcattgcataaccagatcagaaacatggat
agcatgccagagcttcagaaactgcagcagcttaaagatgaaactggagaactgtcatct
gctgatgagaaacgttaccgtgcactgaaacgaacagcagagcgtgaattacttatgaat
gcagatgtgatctgttgcacatgtgtgggagctggtgatccaagacttgcaaaaatgcag
ttccgctccattctgattgatgaaagcacacaggctactgagccagagtgcatggtgcca
gttgtcctgggagcaaaacagcttattcttgtgggtgaccactgccagcttggtcctgtt
gtgatgtgtaaaaaagctgcaaaggctggcctatctcagtctctcttcgagaggcttgtg
gtgctggggattcgtccaattcgcctgcaagtgcagtatcgcatgcatcctgcacttagt
gcttttccatccaatatcttctatgagggttcactccagaatggtgttactgcagcggac
cgtgtgaaaaaagggtttgatttccagtggccacagccagataagccaatgtttttctat
gttacacaaggacaggaggaaattgccagctcaggcacctcttacttaaacaggacggaa
gctgccaatgtggagaagataactacaaagctattgaaagctggtgccaaaccagatcag
attggcattattactccttatgaaggtcaacgatcctatctggtgcagtacatgcaattc
agtggttccttgcatacaaagctttaccaggaagtggaaattgcaagtgtggatgccttc
cagggccgagagaaggactttattatcctttcttgtgtgagggccaatgaacaccaagga
atagggtttctgaatgaccccaggcgtcttaacgtagctcttacaagagcaaggtatgga
gtaattattgttgggaacccaaaagcactgtctaaacaaccactttggaatcacctgctg
aattactacaaggagcagaaggttctggtggagggaccactgaataatctccgggaaagc
cttatgcagtttagcaagccccggaaacttgtcaataccatcaacccaggtgcccgtttc
atgactactgccatgtatgatgcacgtgaggctattattccaggatctgtctatgaccgg
agcagtcaagggcgcccatccaacatgtacttccaaacccatgaccagatcgggatgatt
agtgctggccccagccatgtcgctgctatgaacattcctatccctttcaaccttgtgatg
ccaccgatgccaccaccgggatactttggccaggctaacggaccagccgcaggacgtggg
gcgccaaaagggaagactggtcgtggtgggcgccagaaaaatcgttttgggattcctgga
actagtcagtcaaaccttccaaatagtcaagcgagccaagatgtggtgtcccagcctttc
tcccagggtccactgactcaggggtatatctccatgagtcagccatcacagatgagtcag
cctgggctctcccaaccagaattatcacaggacagttaccttggtgatgagtttaaatct
cagattgacgtggcgctgtcacaggactctacttaccagggtgaacgtgcatatcaacat
ggtggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
