Halomonas alkaliantarctica: QEN58_00745
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Entry
QEN58_00745 CDS
T09033
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
half
Halomonas alkaliantarctica
Pathway
half03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
half00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QEN58_00745 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
half03021
]
QEN58_00745 (rpoC)
03400 DNA repair and recombination proteins [BR:
half03400
]
QEN58_00745 (rpoC)
Enzymes [BR:
half01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QEN58_00745 (rpoC)
Transcription machinery [BR:
half03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QEN58_00745 (rpoC)
DNA repair and recombination proteins [BR:
half03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QEN58_00745 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WGI25612
LinkDB
All DBs
Position
159395..163609
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLVKVLKSQSQSEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFVVIDPGMTTLERGQLMNDEQYFEALEEFGDDFDARM
GAEAVQELLKDIDLEEEINHLREEIPQTNSETKIKKLSKRLKLLEAFYHSGNAPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQSLGYASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMVFSDLNEVERAFGTQ
SVSLHARVKVRLDEIDIEEESGERSFHRRIYDTTVGRALLFRILPEGVPFALIDQPMKKK
AISSLINEVYRRAGLKPTVIFADQLMYTGFRLATWSGASIGVNDFVIPEAKTEIVDAAEA
EVKEIEDQFSSGLVTAGEKYNKVIDIWSKANDKVAKAMMVGISKETVIDRDGNEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVITEVDCGTENGLTLHPIIEGGDIIVPLSQRV
LGRVVAQDVIHPGSGEVQLAKGTLLDEKWCAELDTMGVDEIIVRSTITCETAHGVCASCY
GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSSAVDSVQVKHGGKVR
LHNIKHVERADGKLVVVSRSSALAVADDHGREREYYKLPYGAELSVRDGDVVDAGATVAK
WDPHTHPIVAEVEGKAQFIDLDEGVTMHRSVDEMTGLSSIEVIESAARPMAGRDKRPMVM
LQDNAGEYVSVSGSNTPVQYLLPGNSIISVDDGVTIGVGEVVARIPVEASANKDITGGLP
RVADLFEARKPKESSILAEISGVISFGKETKGKRRLTITPESGDPFEALIPKWRQIAVFE
GETVEKGEVISDGPSNPHDILRLLGVEELAKYITAEVQDVYRLQGVGINDKHIEVIVRQM
LRKVEITDSGDSDFITGDQAELVRVLEQNERLEKEKKFPAKYSRMLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLTHHAERRRKREDVEQLF
NPSATEVEQELGAQLTALDSDDEL
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtactcaaatcgcagtctcagtccgaagagtttgacgcgatc
aagattaccctggcgtcgccggacatgattcgctcctggtcgtttggcgaggtgaagaag
cctgagaccatcaactaccgtacctttaaaccggagcgggacggtctgttctgcgccaag
atttttggcccggtaaaggactacgagtgcctgtgcggcaagtataagcgcatgaagcac
cgcggtattatctgcgaaaagtgtggcgtagaagtgaccaaagccgccgtgcgccgtgag
cgcatggggcacatcgaactcgcctcgccggtagcccacatttggtttttgaagtcactg
ccatcgcggatcggcatgttcctcgatatgaccctgcgtgatatcgagcgcgtgctgtac
ttcgaaagctttgtcgttatcgatccaggtatgaccacgctggagcgtggtcagctgatg
aacgacgagcagtactttgaagcgctggaagagttcggtgatgacttcgatgcccgcatg
ggtgccgaagccgttcaggagctgctcaaagacatcgatctggaagaagagattaaccac
ctgcgtgaagaaattccgcagactaactctgaaaccaagatcaagaagctctccaagcgc
ctcaagctgcttgaagccttctaccactccggcaatgcgccggcgtggatggtcatggaa
gtgttgcccgtgctgccgccggacctgcgtccgctggtaccgctcgacggtggccgtttc
gcgacctcagatctcaacgacctttaccgtcgtgtgatcaaccgtaacaaccgcctgaaa
cgtctgcttgacctcaatgcgccggatattattgtgcgtaacgagaagcgtatgcttcag
gaagcggtcgatgcactgctggataacggtcgtcgtggccgtgcgatcacgggctctaac
aagcgtccgctgaaatcgctcgccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaagcgcgtcgactactcgggccgttcggttattaccgtaggtccgacc
ctgcgcctgcaccagtgtggtctgcccaagaaaatggcgcttgagctgttcaagccgttt
atctactccaagctgcagtcgctgggctacgcctcaacgatcaaagccgccaagaagatg
gtcgagcgcgagctgccggaagtgtgggacatcctcgccgatgttatccgcgagcacccg
gtactgcttaaccgtgcgcctacgcttcaccgtctgggtatccaggcgtttgagccgctg
ttgatcgaaggtaaagcgatccagctgcacccgctggtgtgtgccgcctacaacgccgac
tttgacggtgaccagatggcggtacacgtaccgctgacgctggaagcccagcttgaagcc
cgtgcgctgatgatggcgaccaataacgtgctgtcgcctgccaacggcgagccgatcatc
gtaccgtcgcaagacgttgttctgggtctctattacatgacccgcgaaaagatcaacgcc
aaaggcgaaggcatggtgttctctgaccttaatgaagttgagcgcgcgtttggtactcag
tcagtatcgctgcacgcacgggtcaaagtgcgtctggacgaaatcgatatcgaagaagag
agcggcgagcgtagcttccaccgccgtatttacgatacgacggtaggtcgtgcactgctg
ttccgtattctgcccgaaggcgtgcccttcgcgctgatcgatcagccgatgaagaagaag
gcgatctccagcctgatcaacgaagtctatcgtcgtgccggccttaagccgaccgtcatc
tttgctgaccagctgatgtataccggcttccgtctggcgacctggtcgggtgcatctatc
ggtgttaacgacttcgttatccctgaagcgaaaaccgaaatcgttgacgcggcggaagcc
gaagttaaagagatcgaagaccagttctcttctggcctggtaacagcgggcgagaagtac
aacaaggttatcgatatctggtccaaggccaacgataaagtcgccaaggcgatgatggtg
ggtatctctaaagagaccgtcatcgatcgtgatggcaacgaggttgagcaggattcgttc
aacagcgtcttcatcatggccgactccggtgcgcgtggttctgctgcccagattcgtcag
cttgccggtatgcgtggcctgatggccaagccggatggctcgatcatcgaaacgccgatc
gtcgctaacttccgtgaaggtctgaacgtacttcagtacttcatctcgacccacggtgca
cgtaaaggtcttgcggatacggccctgaaaaccgccaactccggttacctgacgcgtcgc
ttggtagacgtggcgcaagacttggtcatcactgaagttgactgtggtactgaaaatggc
ctgacgctacacccaatcatcgaaggcggtgacatcattgtaccgctttcccagcgcgta
ctaggccgcgtggtggctcaggatgtcattcatccgggcagcggtgaagtgcagctcgct
aaaggcaccctgctcgacgagaagtggtgtgccgagctcgacaccatgggtgtcgacgag
atcatcgtgcgctctacgattacctgtgagaccgcgcacggtgtgtgtgcctcctgttac
ggtcgtgacttggcgcgtggccatcaggtcaacatcggtgaagccgtcggcgttatcgct
gcacagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggt
gcggcatcgcgttcgtctgctgtcgacagcgtacaggttaagcacggcggtaaggttcgt
ctgcacaacatcaagcacgttgagcgtgctgacggaaagctggtcgtggtgtcgcgttct
agcgccctggccgttgctgacgaccatggccgtgagcgtgagtactataagctcccttac
ggtgctgagctttccgtacgtgacggcgacgtggtcgatgccggtgcaacggtcgccaaa
tgggacccgcacactcacccgatcgttgccgaagtagaaggtaaggcgcagttcatcgat
ctcgacgagggtgtcaccatgcaccgtagcgtcgatgagatgaccggcctctcctctatt
gaggtgatcgagtccgcagcacgtcccatggccggtcgcgataagcgcccgatggttatg
ctgcaagacaacgcgggcgagtacgtctctgtatccggctctaatactccggtgcagtac
ttgctgccaggcaactcgattatttcggtcgacgatggcgtgacgatcggggtgggtgaa
gtggttgcccgtatcccggtagaagcctcggcgaacaaagacatcaccggtggtctgcca
cgggttgctgacttgttcgaagcacgtaagccgaaagagtcctctatcctggccgagatc
agcggtgtgatcagcttcggcaaagagaccaaaggtaaacgtcgtctgacgattaccccg
gaatctggcgatccgtttgaggcgctgattccgaaatggcgtcaaatcgccgtcttcgaa
ggcgaaactgtcgagaagggcgaggtgatttccgacggcccgagcaaccctcacgatatc
ctgcgcttgctaggtgttgaggaactcgccaagtacatcactgccgaagtacaggacgtt
tatcgtctgcagggcgtaggcattaacgacaagcacatcgaagtgatcgtgcgtcagatg
ctgcgcaaggtagagattactgattcgggcgactctgacttcatcaccggcgaccaggca
gagctggttcgcgtgctggaacagaacgaacgccttgaaaaagagaagaaattcccggcc
aagtattcgcgtatgctgctgggtatcaccaaggccagcttggccaccgagtcgttcatt
tccgcggcctccttccaggagacaacccgcgtactgaccgaagcagcggtgactggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggtggttggtcgcctgataccagcaggt
acgggcttgactcaccacgcagagcgtcgtcgcaagcgcgaagacgtcgagcaactgttc
aatccttcggctaccgaagtcgaacaggagctgggtgctcagttgaccgctctcgattct
gatgacgagttgtag
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integrated database retrieval system
