Halomonas alkaliantarctica: QEN58_07480
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Entry
QEN58_07480 CDS
T09033
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
half
Halomonas alkaliantarctica
Pathway
half03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
half00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QEN58_07480 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
half03019
]
QEN58_07480 (rne)
03009 Ribosome biogenesis [BR:
half03009
]
QEN58_07480 (rne)
Enzymes [BR:
half01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QEN58_07480 (rne)
Messenger RNA biogenesis [BR:
half03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QEN58_07480 (rne)
Ribosome biogenesis [BR:
half03009
]
Prokaryotic type
rRNA processing factors
QEN58_07480 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WGI26892
LinkDB
All DBs
Position
complement(1656078..1659422)
Genome browser
AA seq
1114 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDY
GADRHGFLPLKEISREYFVKDVSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFVSL
AGRFLVLMPNNPRAGGISRRIEGDERSQLKDAMGQLTVPDKMGLIVRTAGIGRNPEELQW
DLDYLVQVWESITTEAAKRPAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALA
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQNVRVVLLPNPEMDTPHY
DVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPAPSFVPPALRAEAAVKSVTHNAPAPAS
LQTEEKAPAASPASATKAAPVTSEQPSVIGRFMRGFAKLLGSDESSSEATPEPKVETPAP
RKPSERKTHQRSNESRQKSSRGERGDNASRNESRSESSARPEPKAEQKADTKAEQRSSTP
RPASDDNSDKRSGPSRTRNRRRHPQQDDTSGQESANKAPRKETQADSSSSKDSAAKDGSK
ESNNGKSAAQKESRRDTGGDKNRNNQRDEAANGSETKPPETPQDDGKPKRTRNNPRNRTR
TQAINPQAEAEQLKLQAEVQDEAPAATQEPSEAPAKEEQAPVAKAATSDAPTTTESASES
HTAAPADDTAQQEVAAADAPESNAKPETKPEPEQADDATTADRPVAENAKARKSTHQRRQ
PKAVSASEQTPADNTVEQDEAVAKPSQPETAANAEQVAPSEVNSTEAEASAEPSVSEKTD
DSQPSVSEPVTPKAIEPPAGNVVDPAATIEEAAAPTPLSSDTDQSSEPKQDTAAKADEPQ
NVKDGNVEDPGVEATGVELNSAEDNSPEKSGDERGTTEAPVTEAEPQPAQPVASETPVEN
AATEEAAKPRRRRTRAHNDPREKRKQAQQDTRSE
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgcttattaatgcgacccagccagaagagctgcgtgtcgctttagttgat
ggacaacgcctttacgatttagatatcgaatccggcgcaagagaacagaaaaaagccaat
atctatcgcggcaaaatcacccgcgtagagccctcccttgaagcggcctttgttgactac
ggcgctgatcgtcacggctttttgcctttaaaagagatctctcgcgagtactttgtcaaa
gacgtttccggacgtccgagcattaaagaagtgcttaaagagggccaagaggtcatcgtc
caggtcgataaagaggagcgtggcaataaaggcgccgcgctgaccacttttgttagcctg
gctggccgctttttggtattgatgcccaataatccgcgtgctggcggcatttctcgccgt
atagaaggcgatgaacgcagccagctcaaagatgccatgggtcagctgaccgtaccggat
aaaatgggcctgatcgtgcgcactgctggcatcggccgcaacccggaagagctgcagtgg
gacttggattatttggttcaggtgtgggaatccatcactaccgaagccgccaagcgccct
gctccgttcctgatttaccgtgaatccaacgtcatcattcgcgccatgcgcgattaccta
cgccaggatattggcgaagtgttgatcgacagccccgagattcatgccgaagcgctggct
tttatccgtcaagtaatgccttcgtatcagcaaaagatcaaactctacgcggacgaagta
cccctgttctcgcgcttccagatcgaatcgcaaatcgaaaccgcctatcagcgcgaagtg
aagttaccttctggcggctcgattgtgatcgaccacaccgaagcgctggtctctatcgat
atcaactccgcccgcgccacccgcggcagcgatatcgaagagactgcactacagaccaac
tctgaagccgccgatgaaatcgcccgccagctgcgcctgcgcgatatcggcggtttggtg
gttatcgactttatcgacatggggccggcgcgcaatcagcgtgaagttgaaaaccgcatg
cgcgacgctctaaagctggatcgcgcccgcgtgcaaattggccgcatttcacgctttggc
ctgatggaaatgtcccgccagcgtctgcgcccctcgctgggtgaaaccagcggcgtggtc
tgcccgcgctgtaatggccagggcaccattcgcgatgtgcgctcactctctctctccatc
atgcgtctgattgaagaagaggcgatgaaagagaatagcgcgcagattcgcgccattctg
ccggtccccgtggcgacttacctgctcaatgaaaaacgtagcgtactggcggaccttgag
tctcgtcagaatgtgcgcgtagtgctgctgcccaatcctgaaatggatacgccccactac
gacgtacagcggttgcgcgatgatcatctggacgaggacgacacacaaagcctatcgagc
tttgagctctccaccgataccgaagtaggcaaagagccggcacccagcttcgtaccgccc
gcgctaagggccgaagctgctgttaagagtgttacgcacaacgctcccgctccggcatcg
ctgcaaactgaagagaaagcgcctgccgcatctccagcctcggcgactaaagcagccccc
gtgaccagcgagcaacctagcgttattggccgctttatgcgcggtttcgccaaactgctc
ggtagcgacgaaagcagttcagaagccacgccagagcccaaggttgaaaccccggcgccg
cgcaagccaagcgagcgtaaaacccatcagcgcagcaacgagtcgcggcaaaagtcgtca
cgtggcgagcgcggtgacaacgcaagccgtaatgagtcgcgcagcgaaagtagcgcccgc
cccgagcccaaagctgaacagaaagctgacacaaaagccgagcagcgcagcagtacgccg
cgccctgccagtgacgataatagcgataagcgcagcggccccagccgcacccgcaaccgc
cgtcgtcaccctcagcaagacgatactagcgggcaagaatcagctaacaaagcacctcgt
aaagagacccaggctgatagctcctcttccaaagacagcgctgcaaaagacggctctaaa
gagagcaacaacggtaaaagtgcagcacagaaagaatcgcgtcgcgataccggtggtgat
aaaaaccgcaacaatcagcgcgatgaagcggccaatggctcagagacaaagccccctgag
actccgcaagacgacggcaagccgaagcgtacgcgtaataatccgcgcaaccgcacacgc
actcaggcaatcaatccccaggccgaagcagagcagttaaaactgcaggctgaagttcag
gatgaagcgccagcagcaactcaagagccgagcgaagctcctgctaaagaagaacaggcg
ccggtagctaaagcagcgacaagtgacgcaccgactaccacagagtcggcatcggagagt
cataccgctgcgccagcagacgataccgctcagcaagaagtggcagcagccgatgcgcct
gagtccaatgctaagcccgagactaagccggagcctgagcaagcggacgacgcaacgacc
gccgaccggcctgtggcagagaacgctaaagcgcgcaaatcgactcaccagcgccgtcag
cctaaagcggtgtcagcgtcggaacagacgccagctgacaataccgttgagcaggatgag
gccgttgccaagccgagccaaccggagaccgcagccaacgctgagcaggtagcaccatca
gaggtgaactcaacagaagccgaggccagcgcagagccatctgtgagtgagaaaaccgac
gatagtcagccaagcgttagcgaaccggtaacgcctaaagccatcgaaccgcctgcgggt
aacgttgtagatccagcggcaactattgaagaagccgccgcccctactcctttgagtagt
gatacggatcaaagcagcgagccgaaacaagacaccgcagcaaaagctgatgagcctcag
aatgttaaagacggaaacgttgaagacccaggtgttgaagccacgggcgttgaactgaat
agcgctgaagataatagccctgaaaagagtggcgacgaacgaggaacgactgaagctcct
gtcactgaagcagagcctcagcctgctcagccggtcgccagtgaaacacccgttgaaaac
gcagcaactgaagaagcggctaaaccacgccgtcgtcgcacccgggctcacaatgacccg
cgtgagaagcgcaaacaggcccagcaagacacccgctccgaataa
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