Halomonas alkaliantarctica: QEN58_12035
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Entry
QEN58_12035 CDS
T09033
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
half
Halomonas alkaliantarctica
Brite
KEGG Orthology (KO) [BR:
half00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
half03019
]
QEN58_12035 (hrpA)
Enzymes [BR:
half01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QEN58_12035 (hrpA)
Messenger RNA biogenesis [BR:
half03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QEN58_12035 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND_NTPase5
AAA_25
nSTAND3
T2SSE
NACHT
SLFN-g3_helicase
PhoH
SRP54
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WGI24071
UniProt:
A0ABY8LHY6
LinkDB
All DBs
Position
complement(2623752..2627756)
Genome browser
AA seq
1334 aa
AA seq
DB search
MEADSIVTTDTSPAPTDSQRLASLKQVAGDVMLRDAERLERRLAGLNRRLRDNKPISRGL
DEVEREFSRSQQQLSQRESQKVALNYPPELPVVERREDILNAIRDHQVVVVAGETGSGKT
TQLPKMCLELGRGRRGLIGHTQPRRLAARSVAGRLAEELEVSLGEQVGYQVRFTDQSSPT
TLVKLMTDGILLAETQHDPLLMRYDTIIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVII
TSATIDVERFAKHFGTAKTPAPVVEVTGRTYPVEVHYRPLVRDEDDEEDRTLQEGILHAV
EEIEAIEREKGWLHGPRDVLVFLPGEREIRETADTLRRAELKGTEILPLYARLSNEEQNR
VFAPHRGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRSKIQRLPVEAVSQASAN
QRKGRCGRIAEGVCIRLYSEEDFLSRPGFTDPEIQRTNLASVILSMLGLKLGDIEAFPFV
DPPDSRFVKDGFRLLFELGAVDEKQRLSPLGRKLARLPIDPRLARMVLAGVEFGSLRDVL
IVVSALAIQDPRDRPADKRQAADQAHQRWHDPDSDFVALLNLWHGIENAREALSGNQLRR
WCREHYINYLRMREWHDTFRQLRQLLRDMDIDVPAPPPRNEDESEEQARQTRRKTSGKVH
QALLSGLLSNLGTLVENREYLGARNRKFMIHPGSGLAKKSPKWIMAFEMVETSKLFARTV
AKIDPQWIEPQAQHLVKRSYSEPHWEMKRAQVVAFEQVTLFGLPIVARRKVHYGPIAPQE
SRELFIRRALVEGEFQTKGAFFAHNRALIDEVEALEDRARRRDILVDEDTLYDFYDQRIP
AEIVNGKGFEHWRKQAEQQEPELLHFDIDSLKARDADDVTQAQYPDHLVLAGVAYPVSYH
FDPEAEDDGVTLTVPAAMVPQVPVHALEWLVPGLLREKCIALLKSLPKSIRRQVVPIPDW
VDAALETLVPDQRPLTEALGEFIRRRTSTRVHPDDWRLDLLEPHLIMNIRVVDHAGEILG
QGRDLRALEQRFEAAASAGAQALAEQVSHEPAVAGLPKTPLPASRVTTQAGIRVEAYPAL
VAEASEFKVALFDHPAKADAAHQEGIARLGIARLPEQVKAIKQLPGVEKCALLFAKVGSK
QALIDDLLLAVFTQVVAQHPLPRSEGEFSQRLDATKNQLVDEAKALLIRVEVALKGHLAV
SKVLKGKLNFALALVYSDVSAQMQRLVYPGFIRDAGAWLDEYPRYTEAALIRLEKAARER
GRDQMMMQDVQALEARFDARRESERRGRVEDPELVAFGWWLQELRVSLFAQQLGTSMVVS
VKRSEKRWQEITSV
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atggaagccgactcaatcgtgaccaccgacacatccccagcccccaccgatagccaacgt
cttgcgtcgctgaaacaggtcgcgggcgatgtgatgctgcgcgatgcagagcggctggag
cggcggctggccggtttaaaccgtcgtctgcgcgataacaagccgattagccgtggtttg
gacgaagtggagcgtgagtttagccgctcccagcagcagcttagccagcgcgaaagccaa
aaggtcgccctcaactatccgccagaattgccggtggtcgaacggcgggaagatattctc
aacgccatccgtgaccatcaggtggtggtagtggctggggagaccggctcaggcaaaacc
acccagttgcctaaaatgtgtttagagctgggtaggggccgccgtggcttaattggccac
actcagccgcgtcgcttggctgcccgcagtgtcgccggtcgtctggcggaagagctggaa
gtctctttgggcgagcaggtgggctatcaggtgcgcttcaccgaccagagcagcccgacg
accttggttaagctgatgaccgacgggatcttgctggccgaaacccagcatgatccgctg
ctgatgcgttacgacaccatcattattgatgaagcccatgagcgcagcctgaatatcgac
tttctgcttggttacctcaagcgtttgctccccaaacggcccgacctaaaagtcatcatt
acctcggcgactatcgacgtggagcgctttgccaagcactttggcaccgccaaaacgccc
gctcctgtggtggaagtcaccgggcgcacctatcccgtagaagtgcactaccggccgctg
gtgcgcgacgaggacgatgaggaagaccgcacgcttcaagagggcattctgcacgcggtg
gaagagattgaagccattgagcgcgaaaaaggctggctgcacggcccacgggatgtgctg
gtgtttttaccgggtgagcgcgaaattcgtgaaaccgccgatactctgcgccgtgccgag
ctgaaaggcaccgaaatcctgcccctttacgcacggctctccaacgaagagcagaaccgc
gtgtttgcgccgcaccgcggccggcgcattgtactcgccaccaacgtcgcggaaacgtcg
ttgacggtgcctggaattcgctatgtgatcgacccaggcctcgtgcgtatcagccgctat
agctaccgttccaagatccagcgactgccggtagaagcggttagccaggccagtgccaac
cagcgtaaagggcgctgtgggcggattgccgaaggcgtgtgcattcgcctctatagcgaa
gaggattttctctcccgacccggctttaccgaccctgaaatccagcgcaccaacctggcc
tcggtgattctttcgatgctggggctcaagctcggcgatattgaggcctttccgtttgtt
gatccgccggatagccgctttgttaaagacggcttccgactgctgttcgagctgggcgcg
gtggacgaaaaacagcgcctttctccgctcggacgtaagctggcgcggctgccaattgac
ccacgcctagcgcgtatggtgctggcgggtgtcgaattcggcagcctgcgagatgtactg
atcgtcgtctcggcgctggccatccaagacccccgtgaccgaccagcggataagcgccaa
gccgctgaccaagctcaccagcgctggcacgacccggattccgactttgtcgccttgctg
aacctctggcacggtattgagaatgcccgcgaagcgctgtcgggtaatcagttgcgccgc
tggtgccgtgagcactacatcaactacctgcgtatgcgcgaatggcacgataccttccgc
caactgcgccaactgctgcgcgatatggatatcgacgtgcccgcgccgccgccccgcaat
gaagacgagagcgaagagcaggcgcgtcaaacacggcgtaaaacgtcgggcaaggtgcat
caggcgctactctcggggctgctctccaacctggggacgttggtcgagaaccgcgagtat
ctcggcgcccgcaatcgcaagtttatgattcatccaggctctgggttggccaagaagtcg
cccaagtggatcatggcgttcgagatggtggaaacctccaaactgtttgctcgcaccgtg
gccaaaatcgatccgcagtggatcgaaccccaggcgcagcatctggtgaagcgcagctac
agtgaaccgcattgggaaatgaaacgcgcgcaggtagtggcctttgaacaggtcacgctg
tttggtctgccgattgtggcgcggcgcaaggtacattacgggccaatcgcgcctcaggag
tcccgggaactgtttattcgccgtgcgctggtggaaggggagtttcaaaccaaaggggcc
ttctttgctcataaccgcgcgctaatcgatgaagtcgaagcgctggaagaccgcgctcgg
cggcgagatattctggtcgatgaagacacgctctatgacttttacgaccagcggattccg
gcggagatcgtcaacggcaagggctttgagcactggcgcaagcaggccgagcagcaggag
ccggaattactgcatttcgatattgattcgctcaaagcgcgcgatgctgatgacgttacc
caggcgcagtatcctgatcatttagttctggcgggcgttgcgtatccggtcagctaccac
tttgaccctgaagccgaggatgacggtgttaccctgaccgttcccgccgccatggtgccc
caggtgccggtgcacgctctggagtggctggtgcctgggctgttgcgtgaaaagtgtatt
gcgctgctcaaatcgctgcccaaaagcatccgccgtcaggtggtaccgattcccgattgg
gtggatgcagcgctggaaaccctggttcccgatcagcgtccgttaaccgaggcgttaggg
gagtttattcgccgccggacatcgacgcgggtgcatcctgacgattggcgcctagacttg
ctcgaaccgcacctgataatgaatattcgcgtggtcgatcacgcgggcgaaatcttaggg
caggggcgcgatctgcgcgccttggagcagcgttttgaagcggcagccagcgcaggcgcc
caggccctggctgaacaggttagccacgaacccgccgttgccgggcttcccaagacgccg
ctgcctgcttcacgggtcaccacccaggcaggcattcgcgtagaggcgtatcctgcattg
gttgccgaagccagcgagttcaaagtggcgctgtttgatcaccctgcaaaagctgacgcc
gcccaccaggagggcattgcccggttgggcattgccaggcttcccgagcaggttaaagcg
attaagcaactgccgggtgttgagaagtgcgcgctgctgttcgccaaagtgggcagtaaa
caagccttgatcgacgatctgctgctagcggtgtttacccaggtagtggctcagcacccc
ctgccacgctctgaaggtgagtttagccagcgcctcgacgctactaagaaccaactcgtg
gacgaagcgaaagcgcttttgatacgcgtagaggttgcgctaaaaggccacctggcggtt
agtaaggtgctcaaagggaagcttaattttgccctggcgctggtgtacagcgatgttagt
gcacaaatgcagcgcctggtctatccaggttttatccgcgatgcaggtgcctggctggat
gaatacccgcgctacacagaggcggcgctcattcggcttgagaaagccgcccgggaacgc
ggccgcgatcaaatgatgatgcaagacgtccaagcattagaggcccgttttgatgcgcgc
cgggaaagtgagcgacgcggaagggtggaagacccggaattggtcgcttttggctggtgg
ttgcaagagcttagggtatcgctatttgcgcagcagttggggactagcatggtggtgtcg
gtaaaacgatcggaaaaacgctggcaagagatcactagtgtttag
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integrated database retrieval system
